Os01g0760600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A).
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Os01g0760600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.82 | 0.296 | 12.7 | -1.01 | 0.518 | 0.76 | -0.371 | 2.11 | -0.214 | 5.39 | 19.9 | 4174 | -- | -- |
| 44.78 | 0.312 | 12.6 | -0.746 | 0.519 | 0.345 | -0.593 | -- | -0.0905 | 5.2 | 21.8 | 4532 | -- | -- |
| 40.15 | 0.295 | 12.7 | -1.01 | 0.514 | 0.77 | -- | 2.14 | -0.212 | 5.44 | 19.78 | 4162 | -- | -- |
| 44.58 | 0.311 | 12.6 | -0.765 | 0.506 | 0.319 | -- | -- | -0.11 | 5.49 | 22.12 | 2918 | -- | -- |
| 53.8 | 0.342 | 12.7 | -0.941 | -- | 0.898 | -- | 2.36 | -0.193 | -- | 19.4 | 4899 | -- | -- |
| 47.35 | 0.323 | 12.6 | -0.921 | 0.505 | -- | -0.429 | -- | -0.233 | 5.46 | -- | -- | -- | -- |
| 47.8 | 0.324 | 12.6 | -0.922 | 0.503 | -- | -- | -- | -0.231 | 5.55 | -- | -- | -- | -- |
| 56.52 | 0.35 | 12.6 | -0.816 | -- | 0.274 | -- | -- | -0.121 | -- | 22.5 | 371 | -- | -- |
| 46.68 | 0.318 | 12.5 | -- | 0.501 | 0.716 | -- | -- | 0.106 | 5.52 | 21.1 | 47520 | -- | -- |
| 60.93 | 0.365 | 12.6 | -0.905 | -- | -- | -- | -- | -0.218 | -- | -- | -- | -- | -- |
| 70.18 | 0.392 | 12.6 | -- | 0.488 | -- | -- | -- | -0.128 | 5.64 | -- | -- | -- | -- |
| 59.87 | 0.36 | 12.5 | -- | -- | 0.699 | -- | -- | 0.128 | -- | 22.02 | 46598 | -- | -- |
| 82.54 | 0.424 | 12.6 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 5 | 39.69 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 6 | 39.69 | temperature | 20 | 4320 | < th | dose independent | rect. | 10 | 18 |
| 13 | 39.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 16 | 39.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 26 | 39.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 37 | 39.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 10 | 18 |
| 40 | 39.78 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 44 | 39.78 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 55 | 39.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 117 | 39.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 118 | 39.91 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 120 | 39.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 132 | 39.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 152 | 39.94 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 186 | 39.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 193 | 39.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 242 | 40.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 252 | 40.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 17 |
| 283 | 40.06 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 299 | 40.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 10 | 23 |
| 336 | 40.07 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 349 | 40.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 17 |
| 357 | 40.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 365 | 40.09 | temperature | 20 | 1440 | > th | dose independent | sin | 4 | NA |
| 404 | 40.10 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 405 | 40.10 | temperature | 20 | 1440 | < th | dose independent | sin | 4 | NA |
| 423 | 40.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 649 | 40.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 748 | 40.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 758 | 40.26 | temperature | 20 | 4320 | < th | dose dependent | rect. | 19 | 8 |
| 775 | 40.27 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 841 | 40.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 868 | 40.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 21 |
| 965 | 40.37 | temperature | 20 | 4320 | < th | dose dependent | sin | 16 | NA |