BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0760600 Os01g0760600|AK103586
(460 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0760600 Aspartate aminotransferase, cytoplasmic (EC 2.... 900 0.0
Os02g0797500 Similar to Plastidic aspartate aminotransferase 480 e-135
AK107623 477 e-135
Os02g0236000 Similar to Aspartate aminotransferase (EC 2.6.... 423 e-118
Os06g0548000 Aspartate aminotransferase (EC 2.6.1.1) 417 e-117
AK109721 414 e-116
D10968 186 2e-47
>Os01g0760600 Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase
A)
Length = 460
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/460 (95%), Positives = 439/460 (95%)
Query: 1 MPSANVRGAQPSADRRLSTLVRHLLPXXXXXXXXXXXXXXXXXXXXXLQAFPTMASSSVF 60
MPSANVRGAQPSADRRLSTLVRHLLP LQAFPTMASSSVF
Sbjct: 1 MPSANVRGAQPSADRRLSTLVRHLLPSSARTATTTSTSSSAADADSSLQAFPTMASSSVF 60
Query: 61 AGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINNPSR 120
AGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINNPSR
Sbjct: 61 AGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINNPSR 120
Query: 121 VKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHER 180
VKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHER
Sbjct: 121 VKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHER 180
Query: 181 TIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLHACA 240
TIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLHACA
Sbjct: 181 TIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLHACA 240
Query: 241 HNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGELLM 300
HNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGELLM
Sbjct: 241 HNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGELLM 300
Query: 301 AQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATILKD 360
AQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATILKD
Sbjct: 301 AQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATILKD 360
Query: 361 SAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGLNSDQVAF 420
SAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGLNSDQVAF
Sbjct: 361 SAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGLNSDQVAF 420
Query: 421 MRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKLK 460
MRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKLK
Sbjct: 421 MRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKLK 460
>Os02g0797500 Similar to Plastidic aspartate aminotransferase
Length = 458
Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/396 (56%), Positives = 297/396 (75%), Gaps = 2/396 (0%)
Query: 58 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 117
S F G+ AP DPILGV+ A+ D + +K+NLGVGAYRTEE +P VLNVV++AE +++
Sbjct: 56 SRFEGVPMAPPDPILGVSEAFKADQNDLKLNLGVGAYRTEELQPYVLNVVKKAETLMLEK 115
Query: 118 PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 177
KEYLPI GLA FNK +A+L+FGAD+P +++ RVAT+Q LSGTGSLR+ F+ R++
Sbjct: 116 GEN-KEYLPIEGLAAFNKATAELLFGADNPVLKQGRVATLQSLSGTGSLRLAAAFIQRYF 174
Query: 178 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 237
E + I PTWGNH +F A + YRYYDP T GLDF+G++ D+ +AP G+ VLLH
Sbjct: 175 PEAKVLISSPTWGNHKNIFNDAKVPWSEYRYYDPKTVGLDFEGMIADIQAAPDGSFVLLH 234
Query: 238 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 297
CAHNPTG+DPT +QWE+I +++ K +PFFD AYQGFASGSLD+DA SVR+FV G E
Sbjct: 235 GCAHNPTGIDPTPEQWEKIADVIQEKKHMPFFDVAYQGFASGSLDEDASSVRLFVQRGLE 294
Query: 298 LLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATI 357
+ +AQSY+KN+GLY ER+GA+++VC + +VA RV+SQLK + RPMYSNPPIHGA IVA +
Sbjct: 295 VFVAQSYSKNLGLYAERIGAINVVCSTPEVANRVKSQLKRLARPMYSNPPIHGARIVANV 354
Query: 358 LKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPG-DWSHIIKQIGMFTFTGLNSD 416
+ D MF EW E++ MA RI ++RQ+L+D+L ++ G DWS I++QIGMF++TGLN
Sbjct: 355 VGDPTMFGEWKQEMEEMAGRIKNVRQKLYDSLSAKDDSGKDWSFILRQIGMFSYTGLNKT 414
Query: 417 QVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAI 452
Q M ++HIYMT DGRIS+AGLS +LADAI
Sbjct: 415 QSDNMTDKWHIYMTKDGRISLAGLSLAKCEYLADAI 450
>AK107623
Length = 432
Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust.
Identities = 218/402 (54%), Positives = 298/402 (74%), Gaps = 3/402 (0%)
Query: 58 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 117
S +A + P D ILGVT A+ +D P K+NLGVGAYR E GKP VL VR+AE+++I +
Sbjct: 32 STWAHVKAGPPDAILGVTEAFKRDQDPRKINLGVGAYRDENGKPYVLPSVRQAEELVITS 91
Query: 118 PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 177
KEYLPITGLADF K +A L +G DS ++ENR+A Q +SGTG+LR+GG FL RHY
Sbjct: 92 KGD-KEYLPITGLADFTKNAAILAYGKDSAPVKENRIAITQSISGTGALRIGGAFLQRHY 150
Query: 178 HE-RTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLL 236
E ++IY+P P+WGNH +F +GL V+ YRYYD T GLDF+G+++D+ +AP+G+IVLL
Sbjct: 151 PEAKSIYLPTPSWGNHTPIFRDSGLEVKQYRYYDKKTVGLDFKGMIDDIKAAPAGSIVLL 210
Query: 237 HACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGG 296
HACAHNPTGVDPT++QW++I +++ K PFFD AYQGFASG D+DA +VR FV++G
Sbjct: 211 HACAHNPTGVDPTVEQWKEISNVVKEKGHFPFFDMAYQGFASGDTDKDAFAVRHFVSEGH 270
Query: 297 ELLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVAT 356
++ ++QS+AKNMGLYGERVGA S+VC D RV+SQ+K+++RP+YSNPP+HGA I AT
Sbjct: 271 QIALSQSFAKNMGLYGERVGAFSVVCADPDERARVDSQIKIIVRPLYSNPPMHGAKIAAT 330
Query: 357 ILKDSAMFNEWTVELKGMADRIISMRQQLFDAL-KTRETPGDWSHIIKQIGMFTFTGLNS 415
IL D ++ +W E+KGMADRI MR L + L + + +W HI QIGMF F G++
Sbjct: 331 ILADQQLYQQWLGEVKGMADRINGMRSTLKNLLVEDLNSKLNWDHITNQIGMFAFLGISP 390
Query: 416 DQVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVT 457
+QVA + E+H+Y+T DGRIS+AG++ + HLA+++H +
Sbjct: 391 EQVAKLVNEHHVYLTGDGRISVAGITNHNVKHLAESLHKVTS 432
>Os02g0236000 Similar to Aspartate aminotransferase (EC 2.6.1.1) (Fragment)
Length = 432
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/403 (51%), Positives = 277/403 (68%), Gaps = 3/403 (0%)
Query: 58 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 117
S+F + A +DPILGVT A+ DPSP KVN+GVGAYR + GKP+VL VR AE+ + N
Sbjct: 33 SLFGHVEPASKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGN 92
Query: 118 PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 177
+ EYLP+ G + S KL +G DS I++ R+A VQ LSGTG+ R+ +F R
Sbjct: 93 LN--MEYLPMGGSIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFL 150
Query: 178 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 237
IYIP PTW NH ++ A + R++ YY P +RGLDF GL++D+ +AP+G+ LLH
Sbjct: 151 PNSQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLH 210
Query: 238 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 297
ACAHNPTGVDPT +QW +I + K PFFD AYQGFASG ++DA+++R+F+ DG +
Sbjct: 211 ACAHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQ 270
Query: 298 LLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATI 357
+ AQSYAKNMGLYG+R G LSI+C AV V+SQL+ + RPMYSNPP+HGA +V+ I
Sbjct: 271 IGCAQSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSII 330
Query: 358 LKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGLNSDQ 417
L D + + W E+KGMADRII MR+ L + L+ +P W HI QIGMF ++G+ +Q
Sbjct: 331 LNDPELKSLWLKEVKGMADRIIGMRKALRENLEGLGSPLSWDHITNQIGMFCYSGMTPEQ 390
Query: 418 VAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKLK 460
V + EYHIYMT +GRISMAG++ + +LA+AIH VTK K
Sbjct: 391 VDRLTNEYHIYMTRNGRISMAGVTTGNVAYLANAIH-EVTKTK 432
>Os06g0548000 Aspartate aminotransferase (EC 2.6.1.1)
Length = 463
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/404 (50%), Positives = 276/404 (68%), Gaps = 3/404 (0%)
Query: 57 SSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLIN 116
+S F + A +DPILGVT A+ DPSP KVN+GVGAYR + GKP+VL VR AE+ +
Sbjct: 63 ASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRIAG 122
Query: 117 NPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARH 176
S EYLP+ G + S KL +G + I++ R+A VQ LSGTG+ R+ +F R
Sbjct: 123 --SMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRF 180
Query: 177 YHERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLL 236
+ IYIP PTW NH ++ A + +++ YY P +RGLDF GL++D+ +AP G+ LL
Sbjct: 181 LPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLL 240
Query: 237 HACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGG 296
HACAHNPTGVDP+ +QW +I + K PFFD AYQGFASG ++DA+++R+F+ DG
Sbjct: 241 HACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDPERDAKAIRIFLEDGH 300
Query: 297 ELLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVAT 356
++ AQSYAKNMGLYG+R G LSI+C AV V+SQL+ + RP+YSNPP+HGA IV+T
Sbjct: 301 QIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVHGALIVST 360
Query: 357 ILKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGLNSD 416
IL D + + W E+KGMADRII MR L + L+ +P W HI QIGMF ++G+ +
Sbjct: 361 ILGDPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHITNQIGMFCYSGMTPE 420
Query: 417 QVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKLK 460
QV + +E+HIYMT +GRISMAG++ + +LA+AIH VTK K
Sbjct: 421 QVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIH-EVTKTK 463
>AK109721
Length = 419
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/404 (48%), Positives = 270/404 (66%), Gaps = 3/404 (0%)
Query: 56 SSSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLI 115
S+ + + AP DPILGVT A+ +D +P K+NLGVGAYR + GKP VL V++AE+ L
Sbjct: 18 STHWWTNVKMAPPDPILGVTDAFKRDKNPNKINLGVGAYRDDNGKPYVLECVKKAEKQLA 77
Query: 116 NNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLAR 175
+ KEY ITG++DF + + +L+ G DSPAI+ Q +SGTG LRVG EFL +
Sbjct: 78 EQ-NLDKEYTQITGVSDFCEAAVRLLLGDDSPAIKNKLYGVAQTISGTGGLRVGFEFLRK 136
Query: 176 HY-HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIV 234
+ + +T+++P PTWGNH + + V+ YRYY P+ RG DF+G LEDL P ++
Sbjct: 137 YSPYAKTVWMPTPTWGNHGPIANDSTFEVKYYRYYKPSNRGFDFEGCLEDLNKIPEKNVI 196
Query: 235 LLHACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVAD 294
LL +CAHNPTGVDPT +QW++I +++ + L PF D+AYQGFASG +D+DA + R+F D
Sbjct: 197 LLQSCAHNPTGVDPTQEQWKEISHVIKKRQLFPFLDTAYQGFASGDIDRDAFAPRLFARD 256
Query: 295 GGELLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIV 354
G E ++AQS++KNMGLYGERVG +S V R+ SQL++ IR +YSNPP HGA +
Sbjct: 257 GHEFIVAQSFSKNMGLYGERVGTVSFVVNDKQDLERILSQLRVTIRRLYSNPPRHGAQVA 316
Query: 355 ATILKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGLN 414
A +L + W E+K MADRII+MR L D LK + +W HI QIGMF FTGL
Sbjct: 317 ARVLTQPDLRALWLKEVKLMADRIITMRSTLVDNLKKEGSKHNWQHITDQIGMFCFTGLQ 376
Query: 415 SDQVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTK 458
QV + +++ +Y+T DGRIS+AG+S + +LA AIH VTK
Sbjct: 377 EKQVERLIKDFSVYLTKDGRISIAGVSSKNNAYLAHAIH-EVTK 419
>D10968
Length = 102
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/102 (92%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 302 QSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATILKDS 361
QSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATILKDS
Sbjct: 1 QSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATILKDS 60
Query: 362 AMFNEWTVELKGMADRIISMRQQLFDALKT-RETPGDWSHII 402
AMFNEWTVELKGMADRIISMRQQLFDALKT R + HII
Sbjct: 61 AMFNEWTVELKGMADRIISMRQQLFDALKTERNSWRPXXHII 102
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,667,856
Number of extensions: 594210
Number of successful extensions: 1177
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1166
Number of HSP's successfully gapped: 7
Length of query: 460
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 356
Effective length of database: 11,605,545
Effective search space: 4131574020
Effective search space used: 4131574020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)