Os06g0548000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aspartate aminotransferase (EC 2.6.1.1).
FiT-DB / Search/ Help/ Sample detail
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Os06g0548000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aspartate aminotransferase (EC 2.6.1.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.01 | 0.293 | 11.5 | -1.1 | 0.868 | -0.581 | -0.00399 | 0.486 | -0.162 | 7.22 | 79.1 | 1430 | -- | -- |
| 39.27 | 0.292 | 11.5 | -1.05 | 0.865 | -0.56 | -0.0212 | -- | -0.152 | 7.24 | 78.21 | 1405 | -- | -- |
| 39.01 | 0.291 | 11.5 | -1.1 | 0.865 | -0.586 | -- | 0.462 | -0.159 | 7.24 | 78.26 | 1418 | -- | -- |
| 39.26 | 0.292 | 11.5 | -1.06 | 0.866 | -0.571 | -- | -- | -0.153 | 7.31 | 77.58 | 1388 | -- | -- |
| 78.36 | 0.412 | 11.5 | -1.09 | -- | -0.669 | -- | 0.526 | -0.151 | -- | 78.27 | 1375 | -- | -- |
| 43.48 | 0.309 | 11.4 | -1.1 | 0.88 | -- | -0.0301 | -- | -0.0871 | 7.2 | -- | -- | -- | -- |
| 43.49 | 0.309 | 11.4 | -1.1 | 0.88 | -- | -- | -- | -0.087 | 7.2 | -- | -- | -- | -- |
| 64.92 | 0.375 | 11.5 | -1.1 | -- | 0.813 | -- | -- | 0.0204 | -- | 65 | 496 | -- | -- |
| 67.16 | 0.382 | 11.5 | -- | 0.99 | -0.774 | -- | -- | -0.133 | 7.57 | 82 | 2261 | -- | -- |
| 84.41 | 0.429 | 11.5 | -1.08 | -- | -- | -- | -- | -0.0718 | -- | -- | -- | -- | -- |
| 75.33 | 0.406 | 11.4 | -- | 0.869 | -- | -- | -- | 0.0354 | 7.28 | -- | -- | -- | -- |
| 94.22 | 0.452 | 11.4 | -- | -- | 0.893 | -- | -- | 0.0606 | -- | 41.8 | 539 | -- | -- |
| 115.35 | 0.501 | 11.4 | -- | -- | -- | -- | -- | 0.0484 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 13 |
| 7 | 38.27 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 12 | 38.33 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 13 | 38.35 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 8 | 14 |
| 14 | 38.37 | humidity | 90.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 18 | 38.38 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 7 | 17 |
| 25 | 38.45 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 34 | 38.50 | humidity | 90.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 38 | 38.52 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 48 | 38.57 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 55 | 38.58 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 64 | 38.63 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 68 | 38.63 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 103 | 38.72 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 106 | 38.73 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 120 | 38.76 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 2 |
| 125 | 38.77 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 143 | 38.80 | wind | 3.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 150 | 38.81 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 155 | 38.82 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 159 | 38.82 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 162 | 38.84 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 171 | 38.85 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 173 | 38.85 | temperature | 15.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 181 | 38.86 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 184 | 38.86 | temperature | 25.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 194 | 38.87 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 24 | 4 |
| 200 | 38.88 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 204 | 38.89 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 212 | 38.89 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 14 |
| 220 | 38.91 | humidity | 90.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 223 | 38.91 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 226 | 38.91 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 18 |
| 235 | 38.93 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 242 | 38.93 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 264 | 38.95 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 281 | 38.97 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 289 | 38.97 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 23 | 14 |
| 292 | 38.97 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 337 | 39.01 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 338 | 39.01 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 352 | 39.02 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 23 | 19 |
| 365 | 39.03 | humidity | 80.0 | 1440 | > th | dose dependent | no | NA | NA |
| 375 | 39.03 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 376 | 39.03 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 396 | 39.04 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 6 | 21 |
| 400 | 39.05 | humidity | 90.0 | 1440 | > th | dose independent | no | NA | NA |
| 404 | 39.05 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 0 | NA |
| 411 | 39.05 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 419 | 39.06 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 422 | 39.06 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 433 | 39.07 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 466 | 39.09 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 480 | 39.10 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 22 | NA |
| 487 | 39.10 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 488 | 39.10 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 502 | 39.11 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 503 | 39.11 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 568 | 39.15 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 22 | NA |
| 572 | 39.15 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 577 | 39.15 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 581 | 39.15 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 593 | 39.16 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 598 | 39.16 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 637 | 39.18 | wind | 3.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 742 | 39.23 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 1 | 17 |
| 744 | 39.23 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 751 | 39.23 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 1 | 17 |
| 756 | 39.23 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 816 | 39.26 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 911 | 39.30 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 951 | 39.32 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 978 | 39.33 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 987 | 39.33 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 997 | 39.34 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 9 | 5 |