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Os02g0797500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Plastidic aspartate aminotransferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14 (0.0168) R2 : 0.0185
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.104 (0.0354) R2dN8 : 0.0239 R2N8 : 0.0185
σ : 0.316
deviance : 45.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.93 0.23 14 0.371 0.797 -0.269 -0.332 0.256 0.146 0.302 8.331 9 -- --
23.88 0.229 14 0.362 0.774 -0.248 -0.0513 -- 0.136 0.296 8.331 9 -- --
23.89 0.229 14 0.365 0.775 -0.248 -- 0.0123 0.136 0.295 8.331 9 -- --
23.89 0.229 14 0.364 0.775 -0.249 -- -- 0.136 0.296 8.331 9 -- --
28.48 0.249 14 0.456 -- 0.406 -- -0.435 0.156 -- 0.03965 75 -- --
26.08 0.239 14 0.346 0.509 -- -0.0702 -- 0.135 0.536 -- -- -- --
26.1 0.239 14 0.349 0.509 -- -- -- 0.136 0.536 -- -- -- --
26.08 0.238 14 0.485 -- 0.399 -- -- 0.193 -- 0.03688 151 -- --
27.38 0.245 14 -- 0.763 -0.232 -- -- 0.0956 0.332 8.331 9 -- --
42.37 0.304 14 0.367 -- -- -- -- 0.144 -- -- -- -- --
29.31 0.253 14 -- 0.515 -- -- -- 0.0969 0.569 -- -- -- --
30.16 0.256 14 -- -- 0.429 -- -- 0.183 -- 0.01728 149 -- --
45.92 0.316 14 -- -- -- -- -- 0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.92 temperature 20.0 30 > th dose dependent rect. 20 7
14 21.69 temperature 20.0 270 > th dose dependent rect. 20 4
17 21.74 temperature 20.0 10 > th dose independent rect. 20 7
65 22.40 atmosphere 1010.0 90 < th dose independent rect. 20 7
115 22.73 temperature 25.0 270 > th dose dependent rect. 20 10
145 22.89 temperature 15.0 90 > th dose independent rect. 3 16
179 23.02 radiation 20.0 10 < th dose dependent rect. 13 7
217 23.13 temperature 20.0 30 > th dose independent rect. 9 18
227 23.14 radiation 10.0 10 < th dose dependent rect. 10 10
228 23.15 humidity 70.0 90 > th dose independent rect. 19 8
230 23.15 radiation 10.0 10 < th dose dependent rect. 6 14
241 23.16 radiation 30.0 90 < th dose dependent rect. 3 16
244 23.17 temperature 10.0 90 > th dose dependent rect. 19 22
248 23.18 radiation 10.0 10 < th dose dependent rect. 4 16
249 23.19 radiation 10.0 10 < th dose independent rect. 13 7
254 23.19 temperature 10.0 30 > th dose dependent rect. 4 16
262 23.21 radiation 20.0 90 < th dose independent rect. 3 16
287 23.27 radiation 10.0 10 < th dose dependent sin 23 NA
293 23.28 temperature 30.0 270 < th dose independent rect. 17 10
301 23.29 wind 5.0 90 < th dose independent rect. 19 8
308 23.30 radiation 10.0 10 < th dose independent rect. 4 16
316 23.31 temperature 15.0 30 > th dose dependent rect. 20 20
322 23.32 atmosphere 1015.0 90 < th dose independent rect. 9 18
323 23.32 temperature 10.0 30 > th dose dependent rect. 9 18
326 23.33 temperature 25.0 270 < th dose independent rect. 19 11
327 23.33 precipitation 0.1 90 < th dose independent rect. 3 17
330 23.33 precipitation 0.1 90 < th dose dependent rect. 3 17
336 23.34 temperature 25.0 270 > th dose independent rect. 19 19
349 23.36 temperature 15.0 30 > th dose dependent rect. 3 6
362 23.39 temperature 25.0 270 < th dose independent rect. 12 18
366 23.40 humidity 60.0 270 > th dose independent rect. 17 10
383 23.41 wind 9.0 90 < th dose dependent rect. 19 8
384 23.41 radiation 10.0 1440 < th dose dependent rect. 18 11
394 23.43 wind 9.0 90 < th dose independent rect. 3 16
398 23.43 temperature 15.0 270 > th dose dependent rect. 6 8
460 23.48 temperature 10.0 10 > th dose dependent rect. 20 22
466 23.49 atmosphere 1015.0 270 < th dose independent rect. 7 18
476 23.50 radiation 10.0 30 > th dose independent rect. 9 7
479 23.50 temperature 30.0 90 < th dose independent rect. 19 8
480 23.50 humidity 50.0 90 > th dose independent rect. 19 8
482 23.50 atmosphere 995.0 90 > th dose independent rect. 19 8
483 23.50 radiation 1.0 90 < th dose independent rect. 19 8
489 23.50 atmosphere 995.0 90 > th dose independent rect. 3 16
490 23.50 atmosphere 1015.0 90 < th dose independent rect. 3 16
493 23.50 humidity 90.0 90 < th dose dependent rect. 18 1
495 23.50 radiation 1.0 90 < th dose dependent rect. 19 8
509 23.51 radiation 1.0 270 < th dose dependent rect. 5 22
511 23.52 temperature 15.0 1440 > th dose independent rect. 10 7
538 23.53 humidity 80.0 90 < th dose independent rect. 18 1
557 23.54 humidity 60.0 10 > th dose independent rect. 3 17
563 23.54 humidity 50.0 90 > th dose dependent rect. 19 8
578 23.56 precipitation 0.1 90 < th dose independent rect. 20 7
585 23.56 temperature 25.0 270 < th dose independent rect. 15 15
588 23.56 radiation 40.0 90 < th dose independent rect. 3 17
593 23.56 precipitation 0.1 90 < th dose dependent rect. 20 7
628 23.58 humidity 80.0 1440 < th dose dependent rect. 18 1
632 23.58 temperature 15.0 10 > th dose dependent rect. 9 7
654 23.59 atmosphere 1015.0 270 < th dose independent rect. 5 22
660 23.59 temperature 15.0 90 > th dose dependent rect. 8 9
688 23.61 humidity 90.0 720 > th dose independent rect. 6 5
746 23.63 atmosphere 1015.0 270 < th dose independent rect. 17 22
769 23.64 temperature 15.0 270 > th dose dependent rect. 1 7
783 23.65 temperature 20.0 30 > th dose independent rect. 9 16
784 23.65 temperature 25.0 90 > th dose dependent rect. 18 1
787 23.65 atmosphere 1015.0 270 < th dose dependent rect. 7 7
791 23.65 radiation 1.0 270 < th dose dependent rect. 17 10
798 23.66 radiation 10.0 10 > th dose independent rect. 9 9
812 23.66 atmosphere 1015.0 10 < th dose independent rect. 20 20
819 23.66 atmosphere 1015.0 10 < th dose dependent rect. 9 7
823 23.66 radiation 40.0 1440 < th dose dependent rect. 21 8
826 23.66 atmosphere 995.0 30 > th dose dependent rect. 4 16
841 23.67 atmosphere 1015.0 270 < th dose independent rect. 19 17
844 23.67 atmosphere 1015.0 270 < th dose independent rect. 19 19
866 23.68 atmosphere 1000.0 10 > th dose independent rect. 12 8
872 23.68 radiation 1.0 270 < th dose independent rect. 16 11
887 23.68 atmosphere 1015.0 90 < th dose independent rect. 19 23
972 23.71 radiation 40.0 10 < th dose dependent rect. 13 20
977 23.72 precipitation 0.1 270 < th dose independent rect. 15 15
978 23.72 humidity 80.0 4320 > th dose dependent rect. 4 1
979 23.72 humidity 50.0 1440 > th dose dependent rect. 18 1
985 23.72 precipitation 0.1 270 < th dose dependent rect. 15 15
988 23.73 humidity 90.0 4320 > th dose independent rect. 4 1