BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0528600 Os06g0528600|AK068518
(387 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0528600 Aminopropyl transferase 687 0.0
Os07g0408700 Similar to Spermidine synthase 2 (EC 2.5.1.16)... 415 e-116
Os02g0254700 Similar to Aminopropyl transferase 345 3e-95
Os02g0237100 Similar to Spermine synthase 110 2e-24
>Os06g0528600 Aminopropyl transferase
Length = 387
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/387 (87%), Positives = 339/387 (87%)
Query: 1 MEXXXXXXXXXXXXQTRGSGDDGSXXXXXXXXXXXXXXXXXXXXXXXXTVVSGWFTEPRS 60
ME QTRGSGDDGS TVVSGWFTEPRS
Sbjct: 1 MEGGGAKDGSAAAAQTRGSGDDGSHKPLPPCCLKAKAAAAESEAKCHATVVSGWFTEPRS 60
Query: 61 HSGKTSKVQYFNNPMWPGEAHSLKVENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLT 120
HSGKTSKVQYFNNPMWPGEAHSLKVENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLT
Sbjct: 61 HSGKTSKVQYFNNPMWPGEAHSLKVENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLT 120
Query: 121 EKDECAYQEMVTHLPLCSIPSPKSXXXXXXXXXXXXREIARHASVENIDICEIDQLVIDV 180
EKDECAYQEMVTHLPLCSIPSPKS REIARHASVENIDICEIDQLVIDV
Sbjct: 121 EKDECAYQEMVTHLPLCSIPSPKSVLVVGGGDGGVLREIARHASVENIDICEIDQLVIDV 180
Query: 181 CKDFFPQLSVGFKDPRVQLHVGDAVDFLRNAPEGKYDAIIVDSSDPIGPAQELVEKPFFQ 240
CKDFFPQLSVGFKDPRVQLHVGDAVDFLRNAPEGKYDAIIVDSSDPIGPAQELVEKPFFQ
Sbjct: 181 CKDFFPQLSVGFKDPRVQLHVGDAVDFLRNAPEGKYDAIIVDSSDPIGPAQELVEKPFFQ 240
Query: 241 TIARALKPGGVLCNQAESMWLHTHLIQDMLSICRETFKGAVHYAWTSVPTYPSGVIGFLL 300
TIARALKPGGVLCNQAESMWLHTHLIQDMLSICRETFKGAVHYAWTSVPTYPSGVIGFLL
Sbjct: 241 TIARALKPGGVLCNQAESMWLHTHLIQDMLSICRETFKGAVHYAWTSVPTYPSGVIGFLL 300
Query: 301 CAKEGPAVNFLSPVNPIEKLEGAMEAGREIRFYNSEVHRAAFVLPTFVRRELESHNTCAE 360
CAKEGPAVNFLSPVNPIEKLEGAMEAGREIRFYNSEVHRAAFVLPTFVRRELESHNTCAE
Sbjct: 301 CAKEGPAVNFLSPVNPIEKLEGAMEAGREIRFYNSEVHRAAFVLPTFVRRELESHNTCAE 360
Query: 361 KDKSETKPVAKPKKMKIMPNSAIPTAS 387
KDKSETKPVAKPKKMKIMPNSAIPTAS
Sbjct: 361 KDKSETKPVAKPKKMKIMPNSAIPTAS 387
>Os07g0408700 Similar to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine
aminopropyltransferase 2) (SPDSY 2)
Length = 323
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 187/306 (61%), Positives = 239/306 (78%), Gaps = 14/306 (4%)
Query: 49 TVVSGWFTEPRSHSGKTSKVQYFNNPMWPGEAHSLKVENILYQGKSPYQEILVFESSTYG 108
V+ GWF+E +PMWPGEAHSLKVE +L+QGKS YQ ++VF+SSTYG
Sbjct: 29 AVIPGWFSEI--------------SPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYG 74
Query: 109 NVLVLDGIVQLTEKDECAYQEMVTHLPLCSIPSPKSXXXXXXXXXXXXREIARHASVENI 168
VLVLDG++Q+TE+DECAYQEM+THLPLCSI PK RE++RH+SVE I
Sbjct: 75 KVLVLDGVIQVTERDECAYQEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQI 134
Query: 169 DICEIDQLVIDVCKDFFPQLSVGFKDPRVQLHVGDAVDFLRNAPEGKYDAIIVDSSDPIG 228
DICEID++V+DV K FFP L+VGF+DPRV LH+GD V FL+NAPEG YDA+IVDSSDPIG
Sbjct: 135 DICEIDKMVVDVSKQFFPHLAVGFEDPRVSLHIGDGVAFLKNAPEGTYDAVIVDSSDPIG 194
Query: 229 PAQELVEKPFFQTIARALKPGGVLCNQAESMWLHTHLIQDMLSICRETFKGAVHYAWTSV 288
PAQEL EKPFFQ++ARAL+PGGV+C QAES+WLH H+I+D+++ CR+ FKG+V+YAWT+V
Sbjct: 195 PAQELFEKPFFQSVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQVFKGSVNYAWTTV 254
Query: 289 PTYPSGVIGFLLCAKEGPAVNFLSPVNPIEKLEGAMEAGREIRFYNSEVHRAAFVLPTFV 348
PTYPSGVIGF+LC+ EGP V+F P+ IE E + ++ ++FYNSE+H A+F LP+F
Sbjct: 255 PTYPSGVIGFMLCSTEGPTVDFQHPIFNIEDNEFSTKSKGPLKFYNSEIHSASFCLPSFA 314
Query: 349 RRELES 354
+R + S
Sbjct: 315 KRVIGS 320
>Os02g0254700 Similar to Aminopropyl transferase
Length = 193
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 164/194 (84%), Positives = 178/194 (91%), Gaps = 1/194 (0%)
Query: 194 DPRVQLHVGDAVDFLRNAPEGKYDAIIVDSSDPIGPAQELVEKPFFQTIARALKPGGVLC 253
DPRV+LHVGDAV+FLRNAPEG YDAIIVDSSDPIGPAQELVEKPFF TIARAL+PGGVLC
Sbjct: 1 DPRVRLHVGDAVEFLRNAPEGTYDAIIVDSSDPIGPAQELVEKPFFDTIARALRPGGVLC 60
Query: 254 NQAESMWLHTHLIQDMLSICRETFKGAVHYAWTSVPTYPSGVIGFLLCAKEGPAVNFLSP 313
NQAESMWLHTHLIQDMLSICRETFKG+VHYAWTSVPTYPSGVIGFLLCAKEGP VNFL+P
Sbjct: 61 NQAESMWLHTHLIQDMLSICRETFKGSVHYAWTSVPTYPSGVIGFLLCAKEGPPVNFLTP 120
Query: 314 VNPIEKLEGAMEAGREIRFYNSEVHRAAFVLPTFVRRELESHNTCAEKDKSETKPVAKPK 373
NPIEKLEGAMEAGR+IRFYNSE+HRAAFVLPTF RRELE++ T E+++ E + A+P
Sbjct: 121 ANPIEKLEGAMEAGRDIRFYNSEMHRAAFVLPTFARRELEAYCTTVEREQQE-ETTAEPL 179
Query: 374 KMKIMPNSAIPTAS 387
KM IMPNS I TAS
Sbjct: 180 KMNIMPNSEILTAS 193
>Os02g0237100 Similar to Spermine synthase
Length = 344
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 107/212 (50%), Gaps = 7/212 (3%)
Query: 85 VENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLTEKDECAYQEMVTHLPLCSIPSPKS 144
+ ++L++G S YQEI + ++ +G L++DG +Q TE DE Y E + H PL P+PK+
Sbjct: 56 LNSVLHRGASKYQEIALIDTKHFGKALIIDGKMQSTEVDEFIYHESLIHPPLLFHPNPKT 115
Query: 145 XXXXXXXXXXXXREIARHASVENIDICEIDQLVIDVCKDFFPQLSVGFKDPRVQLHVGDA 204
RE+ RH +V + +C+IDQ V+D C+ + F ++ L + DA
Sbjct: 116 VFIMGGGEGSAAREVLRHNTVHRVVMCDIDQEVVDFCRTYLTVNWDAFASDKLCLIINDA 175
Query: 205 VDFLRNAPEGKYDAIIVDSSDPI--GPAQELVEKPFFQTIAR-ALKPGGVLCNQA--ESM 259
L + E K+D I+ D +DP+ GP +L K F+Q I + L GV QA +
Sbjct: 176 RAELEKSRE-KFDVIVGDLADPVEGGPCYQLYTKSFYQHIVKPKLNDRGVFVTQAGPAGV 234
Query: 260 WLHTHLIQDMLSICRETFKGAVHYAWTSVPTY 291
H + + + R FK Y VP++
Sbjct: 235 LTHKEVFSSIYNTLRHVFKYVKAYT-AHVPSF 265
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,956,341
Number of extensions: 466868
Number of successful extensions: 771
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 769
Number of HSP's successfully gapped: 4
Length of query: 387
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 284
Effective length of database: 11,657,759
Effective search space: 3310803556
Effective search space used: 3310803556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)