Os06g0528600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminopropyl transferase.
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Os06g0528600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminopropyl transferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.91 | 0.23 | 13.5 | -1.19 | 0.255 | 0.508 | 1.36 | -0.445 | 0.0184 | 2.93 | 22.43 | 307 | -- | -- |
| 24.03 | 0.228 | 13.5 | -1.21 | 0.248 | 0.488 | 1 | -- | 0.00643 | 3.22 | 18.66 | 302 | -- | -- |
| 25.02 | 0.233 | 13.5 | -1.24 | 0.215 | 0.52 | -- | 0.674 | -0.0119 | 3.72 | 15.69 | 297 | -- | -- |
| 26.36 | 0.239 | 13.5 | -1.22 | 0.371 | 0.436 | -- | -- | -0.00854 | 5.22 | 15.16 | 167 | -- | -- |
| 25.4 | 0.235 | 13.5 | -1.23 | -- | 0.679 | -- | 0.763 | 0.00554 | -- | 13.07 | 333 | -- | -- |
| 27.13 | 0.244 | 13.5 | -1.24 | 0.712 | -- | 1.02 | -- | -0.0256 | 2.97 | -- | -- | -- | -- |
| 30.62 | 0.259 | 13.5 | -1.26 | 0.717 | -- | -- | -- | -0.0318 | 3.04 | -- | -- | -- | -- |
| 27.54 | 0.244 | 13.5 | -1.22 | -- | 0.706 | -- | -- | 0.0175 | -- | 15.51 | 333 | -- | -- |
| 65.6 | 0.377 | 13.5 | -- | 0.211 | 0.629 | -- | -- | 0.155 | 6.53 | 16.82 | 215 | -- | -- |
| 60.05 | 0.362 | 13.5 | -1.23 | -- | -- | -- | -- | -0.0131 | -- | -- | -- | -- | -- |
| 72.35 | 0.398 | 13.5 | -- | 0.692 | -- | -- | -- | 0.108 | 3.03 | -- | -- | -- | -- |
| 66.5 | 0.38 | 13.5 | -- | -- | 0.776 | -- | -- | 0.166 | -- | 23.34 | 330 | -- | -- |
| 99.82 | 0.466 | 13.5 | -- | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.09 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 6 | 23.29 | radiation | 20 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 7 | 23.30 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 13 | 23.35 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 16 | 23.38 | radiation | 10 | 90 | < th | dose dependent | sin | 0 | NA |
| 33 | 23.47 | radiation | 10 | 720 | > th | dose independent | rect. | 14 | 19 |
| 38 | 23.49 | radiation | 10 | 720 | > th | dose independent | sin | 12 | NA |
| 59 | 23.57 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 18 |
| 67 | 23.59 | radiation | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 72 | 23.60 | radiation | 10 | 720 | > th | dose independent | rect. | 12 | 21 |
| 76 | 23.60 | radiation | 10 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 86 | 23.65 | humidity | 70 | 270 | > th | dose independent | rect. | 1 | 19 |
| 92 | 23.66 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 20 |
| 98 | 23.67 | radiation | 10 | 270 | < th | dose independent | rect. | 23 | 22 |
| 142 | 23.74 | radiation | 1 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 143 | 23.74 | radiation | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 156 | 23.78 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 18 |
| 160 | 23.78 | radiation | 40 | 720 | < th | dose dependent | rect. | 2 | 14 |
| 224 | 23.87 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 22 |
| 226 | 23.87 | radiation | 20 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 261 | 23.91 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 266 | 23.91 | radiation | 40 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 283 | 23.93 | radiation | 40 | 720 | < th | dose independent | rect. | 8 | 21 |
| 312 | 23.96 | radiation | 30 | 720 | < th | dose dependent | rect. | 7 | 20 |
| 344 | 23.98 | radiation | 10 | 720 | > th | dose independent | sin | 7 | NA |
| 355 | 23.99 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 375 | 23.99 | radiation | 10 | 720 | > th | dose independent | rect. | 14 | 23 |
| 393 | 24.01 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 404 | 24.02 | radiation | 10 | 720 | > th | dose independent | rect. | 17 | 23 |
| 410 | 24.03 | radiation | 20 | 720 | < th | dose independent | rect. | 7 | 22 |
| 411 | 24.03 | radiation | 10 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 426 | 24.04 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 439 | 24.06 | radiation | 10 | 720 | > th | dose independent | no | NA | NA |
| 440 | 24.06 | radiation | 10 | 270 | < th | dose independent | sin | 0 | NA |
| 442 | 24.06 | radiation | 10 | 720 | > th | dose independent | rect. | 5 | 13 |
| 522 | 24.07 | radiation | 10 | 720 | > th | dose independent | rect. | 6 | 10 |
| 526 | 24.07 | radiation | 40 | 720 | < th | dose independent | rect. | 2 | 12 |
| 551 | 24.07 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 587 | 24.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 602 | 24.10 | radiation | 40 | 720 | < th | dose independent | rect. | 24 | 22 |
| 606 | 24.10 | radiation | 10 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 619 | 24.11 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 628 | 24.11 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 633 | 24.11 | radiation | 10 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 635 | 24.12 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 665 | 24.13 | radiation | 40 | 720 | > th | dose independent | rect. | 12 | 22 |
| 702 | 24.15 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 20 |
| 762 | 24.18 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 22 |
| 764 | 24.18 | radiation | 10 | 720 | > th | dose dependent | no | NA | NA |
| 767 | 24.18 | radiation | 10 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 879 | 24.19 | radiation | 10 | 720 | > th | dose dependent | rect. | 6 | 10 |
| 912 | 24.20 | radiation | 40 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 979 | 24.20 | radiation | 40 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 993 | 24.21 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |