BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0528600 Os06g0528600|AK068518
(387 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53120.6 | chr5:21535429-21537653 FORWARD LENGTH=387 473 e-133
AT1G23820.1 | chr1:8420278-8422724 FORWARD LENGTH=379 414 e-116
AT1G70310.1 | chr1:26485497-26487352 REVERSE LENGTH=341 402 e-112
AT5G19530.1 | chr5:6589176-6591091 REVERSE LENGTH=340 121 6e-28
>AT5G53120.6 | chr5:21535429-21537653 FORWARD LENGTH=387
Length = 386
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/334 (67%), Positives = 264/334 (79%), Gaps = 29/334 (8%)
Query: 49 TVVSGWFTEPRSHSGKTS-KVQYFNNPMWPGEAHSLKVENILYQGKSPYQEILVFESSTY 107
TVVSGWF+EP SGK K YFNNPMWPGEAHSLKVE +L++ KS +QE+LVFES+TY
Sbjct: 50 TVVSGWFSEPHPRSGKKGGKAVYFNNPMWPGEAHSLKVEKVLFKDKSDFQEVLVFESATY 109
Query: 108 GNVLVLDGIVQLTEKDECAYQEMVTHLPLCSIPSPKSXXXXXXXXXXX------------ 155
G VLVLDGIVQLTEKDECAYQEM+ HLPLCSI SPK+
Sbjct: 110 GKVLVLDGIVQLTEKDECAYQEMIAHLPLCSISSPKNVISHLKKFSLSGFLYLVACCNKS 169
Query: 156 ---------------XREIARHASVENIDICEIDQLVIDVCKDFFPQLSVGFKDPRVQLH 200
REI+RH+SVE IDICEID++VIDV K FFP+L+VGF DPRVQLH
Sbjct: 170 VNLKVLVVGGGDGGVLREISRHSSVEVIDICEIDKMVIDVSKKFFPELAVGFDDPRVQLH 229
Query: 201 VGDAVDFLRNAPEGKYDAIIVDSSDPIGPAQELVEKPFFQTIARALKPGGVLCNQAESMW 260
+GDA +FLR +PEGKYDAIIVDSSDP+GPA LVEKPFF+T+ARALKPGGVLCN AESMW
Sbjct: 230 IGDAAEFLRKSPEGKYDAIIVDSSDPVGPALALVEKPFFETLARALKPGGVLCNMAESMW 289
Query: 261 LHTHLIQDMLSICRETFKGAVHYAWTSVPTYPSGVIGFLLCAKEGPAVNFLSPVNPIEKL 320
LHTHLI+DM+SICR+TFK +VHYAW+SVPTYPSGVIGF+LC+ EGPAV+F +P+NPIEKL
Sbjct: 290 LHTHLIEDMISICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKL 348
Query: 321 EGAMEAGREIRFYNSEVHRAAFVLPTFVRRELES 354
+GAM RE++FYNS++HRAAF LPTF+RRE+ S
Sbjct: 349 DGAMTHKRELKFYNSDMHRAAFALPTFLRREVAS 382
>AT1G23820.1 | chr1:8420278-8422724 FORWARD LENGTH=379
Length = 378
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 186/306 (60%), Positives = 243/306 (79%), Gaps = 16/306 (5%)
Query: 49 TVVSGWFTEPRSHSGKTSKVQYFNNPMWPGEAHSLKVENILYQGKSPYQEILVFESSTYG 108
TV+ GWF+E +PMWPGEAHSLKVE +L+QGKS YQ+++VF+S+TYG
Sbjct: 86 TVIPGWFSE--------------MSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYG 131
Query: 109 NVLVLDGIVQLTEKDECAYQEMVTHLPLCSIPSPKSXXXXXXXXXXXXREIARHASVENI 168
VLVLDG++QLTE+DECAYQEM+THLPLCSIP+PK RE+ARHAS+E I
Sbjct: 132 KVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQI 191
Query: 169 DICEIDQLVIDVCKDFFPQLSVGFKDPRVQLHVGDAVDFLRNAPEGKYDAIIVDSSDPIG 228
D+CEID++V+DV K FFP +++G++DPRV L +GD V FL+NA EG YDA+IVDSSDPIG
Sbjct: 192 DMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIG 251
Query: 229 PAQELVEKPFFQTIARALKPGGVLCNQAESMWLHTHLIQDMLSICRETFKGAVHYAWTSV 288
PA+EL EKPFFQ++ARAL+PGGV+C QAES+WLH +I+D++S CRE FKG+V+YAWTSV
Sbjct: 252 PAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSV 311
Query: 289 PTYPSGVIGFLLCAKEGPAVNFLSPVNPIEKLEGAMEAGREIRFYNSEVHRAAFVLPTFV 348
PTYPSGVIGF+LC+ EGP V+F P+NPI+ E + ++ ++FYN+E+H AAF LP+F
Sbjct: 312 PTYPSGVIGFMLCSTEGPDVDFKHPLNPID--ESSSKSNGPLKFYNAEIHSAAFCLPSFA 369
Query: 349 RRELES 354
++ +ES
Sbjct: 370 KKVIES 375
>AT1G70310.1 | chr1:26485497-26487352 REVERSE LENGTH=341
Length = 340
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 241/306 (78%), Gaps = 14/306 (4%)
Query: 49 TVVSGWFTEPRSHSGKTSKVQYFNNPMWPGEAHSLKVENILYQGKSPYQEILVFESSTYG 108
+++ GWF+E +PMWPGEAHSLKVE IL+QGKS YQ+++VF+S+TYG
Sbjct: 46 SIIPGWFSEI--------------SPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYG 91
Query: 109 NVLVLDGIVQLTEKDECAYQEMVTHLPLCSIPSPKSXXXXXXXXXXXXREIARHASVENI 168
VLVLDG++QLTE+DECAYQEM+THLPLCSI +PK RE+ARH+SVE I
Sbjct: 92 KVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHSSVEQI 151
Query: 169 DICEIDQLVIDVCKDFFPQLSVGFKDPRVQLHVGDAVDFLRNAPEGKYDAIIVDSSDPIG 228
DICEID++V+DV K +FP ++VG++DPRV L +GD V FL+NA EG YDA+IVDSSDPIG
Sbjct: 152 DICEIDKMVVDVAKQYFPNVAVGYEDPRVNLIIGDGVAFLKNAAEGTYDAVIVDSSDPIG 211
Query: 229 PAQELVEKPFFQTIARALKPGGVLCNQAESMWLHTHLIQDMLSICRETFKGAVHYAWTSV 288
PA+EL EKPFF+++ RAL+PGGV+C QAES+WLH +I+D++S CR+ FKG+V+YAWTSV
Sbjct: 212 PAKELFEKPFFESVNRALRPGGVVCTQAESLWLHMDIIEDIVSNCRDIFKGSVNYAWTSV 271
Query: 289 PTYPSGVIGFLLCAKEGPAVNFLSPVNPIEKLEGAMEAGREIRFYNSEVHRAAFVLPTFV 348
PTYPSGVIGF+LC+ EGP V+F PV+ I+ E ++++ +++YN+E+H AAF LP+F
Sbjct: 272 PTYPSGVIGFMLCSSEGPQVDFKKPVSLIDTDESSIKSHCPLKYYNAEIHSAAFCLPSFA 331
Query: 349 RRELES 354
++ ++S
Sbjct: 332 KKVIDS 337
>AT5G19530.1 | chr5:6589176-6591091 REVERSE LENGTH=340
Length = 339
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 114/215 (53%), Gaps = 7/215 (3%)
Query: 82 SLKVENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLTEKDECAYQEMVTHLPLCSIPS 141
S + ++L+QG S YQ+I + ++ +G VLV+DG +Q E+DE Y E + H L P+
Sbjct: 47 SFALNSVLHQGTSEYQDIALLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPN 106
Query: 142 PKSXXXXXXXXXXXXREIARHASVENIDICEIDQLVIDVCKDFFPQLSVGFKDPRVQLHV 201
PK+ REI +H ++E + +C+IDQ V+D C+ F S F + +++L +
Sbjct: 107 PKTVFIMGGGEGSAAREILKHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVI 166
Query: 202 GDAVDFLRNAPEGKYDAIIVDSSDPI--GPAQELVEKPFFQTIAR-ALKPGGVLCNQA-- 256
DA L E K+D I+ D +DP+ GP +L K F+Q I + L P G+ QA
Sbjct: 167 KDAKAELEKREE-KFDIIVGDLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGP 225
Query: 257 ESMWLHTHLIQDMLSICRETFKGAVHYAWTSVPTY 291
++ H + + + ++ FK Y VP++
Sbjct: 226 AGIFTHKEVFTSIYNTMKQVFKYVKAYT-AHVPSF 259
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,704,602
Number of extensions: 306721
Number of successful extensions: 597
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 5
Length of query: 387
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 287
Effective length of database: 8,364,969
Effective search space: 2400746103
Effective search space used: 2400746103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)