Os02g0254700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Aminopropyl transferase.
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Os02g0254700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Aminopropyl transferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.65 | 0.247 | 13.3 | -1.22 | 0.384 | -0.502 | -0.0362 | 0.883 | -0.158 | 22.1 | 23.2 | 10 | -- | -- |
| 28.62 | 0.249 | 13.3 | -1.11 | 0.37 | -0.595 | 0.164 | -- | -0.119 | 22.4 | 22.4 | 2 | -- | -- |
| 27.6 | 0.247 | 13.3 | -1.22 | 0.387 | -0.505 | -- | 0.875 | -0.159 | 22.1 | 23.2 | 10 | -- | -- |
| 28.43 | 0.248 | 13.3 | -1.13 | 0.376 | -0.825 | -- | -- | -0.123 | 22.1 | 20.8 | 2 | -- | -- |
| 34.53 | 0.274 | 13.3 | -1.32 | -- | -0.498 | -- | 0.871 | -0.21 | -- | 29.1 | 640 | -- | -- |
| 33.54 | 0.271 | 13.3 | -0.991 | 0.33 | -- | 0.196 | -- | -0.0578 | 21.5 | -- | -- | -- | -- |
| 33.68 | 0.272 | 13.3 | -0.998 | 0.329 | -- | -- | -- | -0.058 | 21.5 | -- | -- | -- | -- |
| 35.45 | 0.277 | 13.3 | -1.14 | -- | -0.521 | -- | -- | -0.168 | -- | 28.7 | 664 | -- | -- |
| 59.36 | 0.359 | 13.2 | -- | 0.347 | -0.214 | -- | -- | 0.0333 | 21.5 | 22.4 | 2 | -- | -- |
| 40.05 | 0.296 | 13.2 | -0.995 | -- | -- | -- | -- | -0.059 | -- | -- | -- | -- | -- |
| 59.91 | 0.362 | 13.2 | -- | 0.329 | -- | -- | -- | 0.0531 | 21.3 | -- | -- | -- | -- |
| 65.29 | 0.378 | 13.2 | -- | -- | 0.245 | -- | -- | 0.0789 | -- | 63.35 | 7 | -- | -- |
| 66.19 | 0.38 | 13.2 | -- | -- | -- | -- | -- | 0.0514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.89 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 2 | 27.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 17 |
| 6 | 27.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 15 |
| 13 | 27.18 | temperature | 25 | 10 | < th | dose dependent | sin | 15 | NA |
| 16 | 27.20 | temperature | 20 | 90 | > th | dose dependent | sin | 13 | NA |
| 49 | 27.54 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 9 |
| 53 | 27.57 | temperature | 20 | 30 | > th | dose independent | rect. | 24 | 23 |
| 69 | 27.62 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 17 |
| 72 | 27.67 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 19 |
| 73 | 27.67 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 23 |
| 76 | 27.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 14 |
| 105 | 27.78 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 11 |
| 131 | 27.82 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 134 | 27.83 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 154 | 27.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 183 | 27.94 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 21 |
| 230 | 28.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 309 | 28.11 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 318 | 28.12 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 329 | 28.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 344 | 28.16 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 360 | 28.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 361 | 28.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 362 | 28.18 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 22 |
| 379 | 28.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 445 | 28.28 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 16 |
| 485 | 28.32 | temperature | 20 | 30 | < th | dose independent | sin | 15 | NA |
| 519 | 28.35 | temperature | 25 | 270 | < th | dose independent | sin | 16 | NA |
| 540 | 28.36 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 547 | 28.37 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 561 | 28.38 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 573 | 28.39 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 21 |
| 579 | 28.39 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 583 | 28.40 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 603 | 28.41 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 605 | 28.41 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 625 | 28.43 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 630 | 28.44 | temperature | 20 | 30 | > th | dose independent | sin | 14 | NA |
| 646 | 28.45 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 23 |
| 668 | 28.47 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 684 | 28.48 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 831 | 28.59 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 23 |
| 832 | 28.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 833 | 28.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 932 | 28.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 937 | 28.65 | temperature | 10 | 30 | > th | dose dependent | rect. | 24 | 23 |
| 945 | 28.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 963 | 28.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 967 | 28.67 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 17 |