BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0254700 Os02g0254700|AK065153
         (193 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53120.6  | chr5:21535429-21537653 FORWARD LENGTH=387          270   3e-73
AT1G23820.1  | chr1:8420278-8422724 FORWARD LENGTH=379            232   1e-61
AT1G70310.1  | chr1:26485497-26487352 REVERSE LENGTH=341          228   2e-60

>AT5G53120.6 | chr5:21535429-21537653 FORWARD LENGTH=387
          Length = 386

 Score =  270 bits (691), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 142/159 (89%), Gaps = 1/159 (0%)

Query: 1   DPRVRLHVGDAVEFLRNAPEGTYDAIIVDSSDPIGPAQELVEKPFFDTIARALRPGGVLC 60
           DPRV+LH+GDA EFLR +PEG YDAIIVDSSDP+GPA  LVEKPFF+T+ARAL+PGGVLC
Sbjct: 223 DPRVQLHIGDAAEFLRKSPEGKYDAIIVDSSDPVGPALALVEKPFFETLARALKPGGVLC 282

Query: 61  NQAESMWLHTHLIQDMLSICRETFKGSVHYAWTSVPTYPSGVIGFLLCAKEGPPVNFLTP 120
           N AESMWLHTHLI+DM+SICR+TFK SVHYAW+SVPTYPSGVIGF+LC+ EGP V+F  P
Sbjct: 283 NMAESMWLHTHLIEDMISICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNP 341

Query: 121 ANPIEKLEGAMEAGRDIRFYNSEMHRAAFVLPTFARREL 159
            NPIEKL+GAM   R+++FYNS+MHRAAF LPTF RRE+
Sbjct: 342 INPIEKLDGAMTHKRELKFYNSDMHRAAFALPTFLRREV 380



>AT1G23820.1 | chr1:8420278-8422724 FORWARD LENGTH=379
          Length = 378

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 104/161 (64%), Positives = 134/161 (83%), Gaps = 2/161 (1%)

Query: 1   DPRVRLHVGDAVEFLRNAPEGTYDAIIVDSSDPIGPAQELVEKPFFDTIARALRPGGVLC 60
           DPRV L +GD V FL+NA EG+YDA+IVDSSDPIGPA+EL EKPFF ++ARALRPGGV+C
Sbjct: 217 DPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVC 276

Query: 61  NQAESMWLHTHLIQDMLSICRETFKGSVHYAWTSVPTYPSGVIGFLLCAKEGPPVNFLTP 120
            QAES+WLH  +I+D++S CRE FKGSV+YAWTSVPTYPSGVIGF+LC+ EGP V+F  P
Sbjct: 277 TQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPDVDFKHP 336

Query: 121 ANPIEKLEGAMEAGRDIRFYNSEMHRAAFVLPTFARRELEA 161
            NPI+  E + ++   ++FYN+E+H AAF LP+FA++ +E+
Sbjct: 337 LNPID--ESSSKSNGPLKFYNAEIHSAAFCLPSFAKKVIES 375



>AT1G70310.1 | chr1:26485497-26487352 REVERSE LENGTH=341
          Length = 340

 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 99/161 (61%), Positives = 134/161 (83%)

Query: 1   DPRVRLHVGDAVEFLRNAPEGTYDAIIVDSSDPIGPAQELVEKPFFDTIARALRPGGVLC 60
           DPRV L +GD V FL+NA EGTYDA+IVDSSDPIGPA+EL EKPFF+++ RALRPGGV+C
Sbjct: 177 DPRVNLIIGDGVAFLKNAAEGTYDAVIVDSSDPIGPAKELFEKPFFESVNRALRPGGVVC 236

Query: 61  NQAESMWLHTHLIQDMLSICRETFKGSVHYAWTSVPTYPSGVIGFLLCAKEGPPVNFLTP 120
            QAES+WLH  +I+D++S CR+ FKGSV+YAWTSVPTYPSGVIGF+LC+ EGP V+F  P
Sbjct: 237 TQAESLWLHMDIIEDIVSNCRDIFKGSVNYAWTSVPTYPSGVIGFMLCSSEGPQVDFKKP 296

Query: 121 ANPIEKLEGAMEAGRDIRFYNSEMHRAAFVLPTFARRELEA 161
            + I+  E ++++   +++YN+E+H AAF LP+FA++ +++
Sbjct: 297 VSLIDTDESSIKSHCPLKYYNAEIHSAAFCLPSFAKKVIDS 337



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,011,415
Number of extensions: 161932
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 3
Length of query: 193
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 100
Effective length of database: 8,556,881
Effective search space: 855688100
Effective search space used: 855688100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)