Os07g0408700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine aminopropyltransferase 2) (SPDSY 2).
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Os07g0408700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine aminopropyltransferase 2) (SPDSY 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.87 | 0.285 | 12 | -0.764 | 0.431 | -0.386 | 0.113 | -1.8 | -0.342 | 17.5 | 0.2818 | 5368 | -- | -- |
| 38.04 | 0.287 | 12 | -0.805 | 0.438 | -0.52 | 0.141 | -- | -0.348 | 17.6 | 0.9968 | 4516 | -- | -- |
| 36.9 | 0.283 | 12 | -0.764 | 0.432 | -0.389 | -- | -1.8 | -0.342 | 17.5 | 0.2793 | 5367 | -- | -- |
| 37.84 | 0.287 | 12 | -0.791 | 0.449 | -0.587 | -- | -- | -0.332 | 17.4 | 1 | 2449 | -- | -- |
| 46.57 | 0.318 | 12 | -0.771 | -- | -0.385 | -- | -1.93 | -0.352 | -- | 0.3289 | 5388 | -- | -- |
| 43.03 | 0.308 | 11.9 | -0.947 | 0.44 | -- | 0.209 | -- | -0.308 | 17.5 | -- | -- | -- | -- |
| 43.13 | 0.308 | 11.9 | -0.948 | 0.441 | -- | -- | -- | -0.307 | 17.5 | -- | -- | -- | -- |
| 46.55 | 0.318 | 12 | -0.606 | -- | -0.562 | -- | -- | -0.374 | -- | 0.7149 | 23876 | -- | -- |
| 40.87 | 0.298 | 12 | -- | 0.47 | -0.756 | -- | -- | -0.364 | 17.4 | 1.255 | 37497 | -- | -- |
| 53.25 | 0.341 | 11.9 | -0.963 | -- | -- | -- | -- | -0.318 | -- | -- | -- | -- | -- |
| 66.82 | 0.382 | 11.9 | -- | 0.457 | -- | -- | -- | -0.202 | 17.5 | -- | -- | -- | -- |
| 52.21 | 0.337 | 11.9 | -- | -- | -0.748 | -- | -- | -0.368 | -- | 1.198 | 37399 | -- | -- |
| 77.69 | 0.411 | 11.9 | -- | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.14 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 34.59 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 6 | 34.92 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 14 | 35.12 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 36 | 35.48 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 44 | 35.52 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 58 | 35.66 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 72 | 35.79 | temperature | 25.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 105 | 36.10 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 115 | 36.13 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 123 | 36.18 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 124 | 36.18 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 131 | 36.25 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 160 | 36.36 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 174 | 36.40 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 185 | 36.45 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 195 | 36.53 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 6 | 15 |
| 216 | 36.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 222 | 36.65 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 230 | 36.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 236 | 36.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 238 | 36.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 7 |
| 244 | 36.74 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 264 | 36.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 273 | 36.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 276 | 36.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 284 | 36.83 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 344 | 36.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 4 |
| 347 | 36.92 | temperature | 30.0 | 90 | < th | dose independent | sin | 6 | NA |
| 364 | 36.94 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 411 | 37.00 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 414 | 37.00 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 419 | 37.01 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 440 | 37.04 | temperature | 30.0 | 90 | > th | dose independent | sin | 6 | NA |
| 448 | 37.05 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 454 | 37.05 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 517 | 37.13 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 519 | 37.13 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 534 | 37.13 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 22 | NA |
| 546 | 37.15 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 555 | 37.15 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 560 | 37.16 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 566 | 37.16 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 21 | 23 |
| 567 | 37.17 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 20 | NA |
| 569 | 37.17 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 20 | NA |
| 575 | 37.17 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 576 | 37.17 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 20 | NA |
| 591 | 37.18 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 605 | 37.19 | radiation | 30.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 634 | 37.21 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 23 | NA |
| 635 | 37.21 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 23 | NA |
| 638 | 37.21 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 16 |
| 639 | 37.21 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 17 |
| 640 | 37.21 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 18 |
| 641 | 37.21 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 23 | NA |
| 650 | 37.21 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 16 |
| 651 | 37.21 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 18 |
| 652 | 37.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 653 | 37.22 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 1 | NA |
| 662 | 37.22 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 665 | 37.22 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 1 | NA |
| 672 | 37.22 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 8 |
| 731 | 37.24 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 746 | 37.25 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 20 |
| 787 | 37.27 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 21 |
| 789 | 37.27 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 799 | 37.27 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 21 |
| 800 | 37.27 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 22 |
| 811 | 37.28 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 2 | NA |
| 821 | 37.28 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 17 |
| 833 | 37.29 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 917 | 37.32 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 946 | 37.32 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 970 | 37.33 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 971 | 37.33 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 996 | 37.33 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 23 |