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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0237100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Spermine synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0507) R2 : 0.105
β1 : -0.187 (0.198) R2dD : 0.00214 R2D : -0.0087
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.928 (0.515) R2dE : 0.0151 R2E : -0.0573
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -28.7 (4.79) R2dD*E : 0.173 R2D*E : 0.0859
γ1 : -0.0715 (0.11) R2dN8 : 0.00119 R2N8 : -0.00251
σ : 0.938
deviance : 400.83
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1003
memory length : 23
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.0169
open length of G : 1.21

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
399.15 0.939 2.91 -0.132 0.0605 -0.966 0.624 -28.9 -0.0568 0.0371 1005 31 0.0156 1.01
431.74 0.975 2.96 0.264 0.103 1.32 -0.0672 -- -0.0763 3.99 1005 31 0.0156 1.01
400.27 0.939 2.92 -0.191 0.101 -0.967 -- -28.7 -0.0712 3.66 1003 23 0.0169 1.21
431.75 0.974 2.96 0.265 0.102 1.32 -- -- -0.0758 3.65 1004 24 0.0167 1.18
400.83 0.938 2.92 -0.187 -- -0.928 -- -28.7 -0.0715 -- 1003 23 0.0169 1.21
444.14 0.988 2.94 0.262 0.175 -- -0.079 -- 0.0238 2.53 -- -- -- --
444.16 0.987 2.94 0.264 0.175 -- -- -- 0.0244 2.4 -- -- -- --
432.32 0.973 2.96 0.269 -- 1.36 -- -- -0.0762 -- 1004 21 0.0867 1.31
433.6 0.975 2.96 -- 0.107 1.32 -- -- -0.105 3.63 1004 24 0.0167 1.18
445.97 0.987 2.93 0.271 -- -- -- -- 0.0287 -- -- -- -- --
446 0.988 2.94 -- 0.18 -- -- -- -0.00502 2.42 -- -- -- --
434.22 0.974 2.96 -- -- 1.36 -- -- -0.106 -- 1004 24 0.0167 1.18
447.91 0.988 2.94 -- -- -- -- -- -0.00142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 399.20 atmosphere 1005.0 30 > th dose independent rect. 24 1
2 399.22 humidity 90.0 30 < th dose independent rect. 24 1
3 399.58 temperature 25.0 10 > th dose independent rect. 24 1
5 399.71 temperature 25.0 30 > th dose dependent rect. 24 1
6 399.80 temperature 25.0 90 > th dose independent rect. 24 3
7 400.13 humidity 90.0 30 < th dose dependent rect. 24 1
8 400.20 temperature 10.0 1440 > th dose independent rect. 1 1
11 400.20 temperature 30.0 1440 < th dose independent rect. 1 1
15 400.20 humidity 50.0 1440 > th dose independent rect. 1 1
25 400.20 atmosphere 995.0 1440 > th dose independent rect. 1 1
26 400.20 radiation 1.0 1440 < th dose independent rect. 1 1
46 400.20 temperature 10.0 1440 > th dose independent rect. 2 23
49 400.20 radiation 1.0 1440 < th dose dependent rect. 1 1
54 400.31 atmosphere 1000.0 30 > th dose dependent rect. 24 1
57 400.60 wind 1.0 30 > th dose dependent rect. 24 1
58 400.67 wind 1.0 30 > th dose independent rect. 24 1
59 400.82 temperature 10.0 30 > th dose dependent rect. 24 1
61 401.06 temperature 15.0 30 > th dose independent rect. 24 1
63 401.27 wind 7.0 30 < th dose independent rect. 24 1
66 401.27 temperature 30.0 30 < th dose independent rect. 24 1
67 401.27 humidity 50.0 30 > th dose independent rect. 24 1
71 401.27 radiation 1.0 30 < th dose independent rect. 24 1
76 401.27 precipitation 0.1 30 < th dose independent rect. 24 1
77 401.27 temperature 10.0 30 > th dose independent rect. 1 23
78 401.27 radiation 1.0 30 < th dose dependent rect. 24 1
83 401.27 precipitation 0.1 30 < th dose dependent rect. 24 1
85 401.47 wind 9.0 30 < th dose independent rect. 1 23
86 401.52 atmosphere 1010.0 30 < th dose independent rect. 24 1
92 402.18 humidity 50.0 30 > th dose dependent rect. 24 1
93 402.25 wind 9.0 30 < th dose dependent rect. 24 1
110 405.48 atmosphere 1015.0 30 < th dose dependent rect. 24 1
119 407.91 temperature 30.0 30 < th dose dependent rect. 24 1
124 409.19 temperature 25.0 270 > th dose dependent rect. 23 2
178 413.35 atmosphere 995.0 30 > th dose independent rect. 1 23
190 414.80 temperature 20.0 10 < th dose dependent rect. 3 10
206 415.13 temperature 25.0 270 > th dose dependent rect. 22 8
219 415.55 temperature 20.0 10 < th dose dependent rect. 3 3
250 417.08 atmosphere 1005.0 30 > th dose dependent rect. 24 3
259 417.61 wind 1.0 90 < th dose dependent rect. 4 1
267 418.15 temperature 20.0 10 < th dose dependent sin 1 NA
283 418.48 wind 1.0 90 < th dose independent rect. 4 1
351 420.63 temperature 20.0 10 < th dose independent rect. 3 4
356 420.73 temperature 20.0 270 < th dose independent rect. 2 2
358 420.77 precipitation 0.1 30 < th dose independent rect. 1 23
359 420.77 precipitation 0.1 30 < th dose dependent rect. 1 23
384 422.03 temperature 25.0 270 < th dose independent rect. 22 8
395 422.58 temperature 20.0 10 < th dose independent rect. 3 10
415 422.74 temperature 25.0 270 < th dose dependent rect. 1 3
425 422.79 temperature 20.0 10 < th dose dependent rect. 24 7
439 422.87 temperature 20.0 10 < th dose dependent rect. 4 1
510 423.63 wind 9.0 90 > th dose dependent rect. 20 14
512 423.68 wind 9.0 90 > th dose dependent rect. 18 16
517 423.94 temperature 25.0 90 < th dose independent rect. 17 14
518 424.00 temperature 25.0 270 < th dose independent rect. 15 14
536 424.44 wind 9.0 90 > th dose independent rect. 20 14
553 424.68 precipitation 0.1 10 > th dose independent rect. 17 3
573 424.68 precipitation 0.1 10 > th dose dependent rect. 17 3
612 424.92 temperature 20.0 90 > th dose independent rect. 3 14
629 425.12 temperature 25.0 270 < th dose dependent rect. 23 6
641 425.24 temperature 20.0 30 > th dose independent rect. 3 21
664 425.49 wind 7.0 30 > th dose independent rect. 21 1
668 425.49 wind 7.0 30 > th dose dependent rect. 21 1
766 425.73 wind 9.0 90 > th dose dependent rect. 18 4
777 425.81 humidity 50.0 30 > th dose independent rect. 1 23
781 425.82 temperature 20.0 10 < th dose independent sin 2 NA
905 425.97 temperature 30.0 90 < th dose dependent rect. 17 14
912 426.01 atmosphere 1000.0 10 < th dose independent rect. 24 3
928 426.13 radiation 10.0 30 < th dose dependent rect. 1 23
965 426.33 temperature 30.0 30 < th dose independent rect. 1 23
968 426.35 temperature 20.0 10 > th dose independent rect. 3 13
971 426.36 temperature 10.0 30 > th dose dependent rect. 3 21