BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0237100 Os02g0237100|AK073410
(344 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G19530.1 | chr5:6589176-6591091 REVERSE LENGTH=340 480 e-136
AT1G23820.1 | chr1:8420278-8422724 FORWARD LENGTH=379 132 3e-31
AT1G70310.1 | chr1:26485497-26487352 REVERSE LENGTH=341 128 5e-30
AT5G53120.6 | chr5:21535429-21537653 FORWARD LENGTH=387 92 5e-19
>AT5G19530.1 | chr5:6589176-6591091 REVERSE LENGTH=340
Length = 339
Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/335 (67%), Positives = 272/335 (81%), Gaps = 6/335 (1%)
Query: 13 MNGGFEVMSGYD----RSSMAPKQ--QQREEESKWYEEEIDDDLKLCYALNSVLHRGASK 66
M EVM G + +P Q +++ WYEE IDDDLK +ALNSVLH+G S+
Sbjct: 1 MGEAVEVMFGNGFPEIHKATSPTQTLHSNQQDCHWYEETIDDDLKWSFALNSVLHQGTSE 60
Query: 67 YQEIALIDTKHFGKALIIDGKMQSTEVDEFIYHESLIHPPLLFHPNPKTVFIMGGGEGSA 126
YQ+IAL+DTK FGK L+IDGKMQS E DEFIYHE LIHP LLFHPNPKTVFIMGGGEGSA
Sbjct: 61 YQDIALLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSA 120
Query: 127 AREVLRHNTVHRVVMCDIDQEVVDFCRTYLTVNWDAFASDKLCLIINDARAELEKSREKF 186
ARE+L+H T+ +VVMCDIDQEVVDFCR +LTVN DAF + KL L+I DA+AELEK EKF
Sbjct: 121 AREILKHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKF 180
Query: 187 DVIVGDLADPVEGGPCYQLYTKSFYQHIVKPKLNDRGVFVTQAGPAGVLTHKEVFSSIYN 246
D+IVGDLADPVEGGPCYQLYTKSFYQ+I+KPKL+ G+FVTQAGPAG+ THKEVF+SIYN
Sbjct: 181 DIIVGDLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGPAGIFTHKEVFTSIYN 240
Query: 247 TLRHVFKYVKAYTAHVPSFADTWGWVMASDYPFSMNAQQINERIKERIDGELVYLSGESL 306
T++ VFKYVKAYTAHVPSFADTWGWVMASD+ F + +++ RI+ER++GEL+YL+ S
Sbjct: 241 TMKQVFKYVKAYTAHVPSFADTWGWVMASDHEFDVEVDEMDRRIEERVNGELMYLNAPSF 300
Query: 307 ISSTILNKSVYQSLLNETHVYTEDDARFIYGHGRA 341
+S+ LNK++ +L ET VY+E++ARFI+GHG A
Sbjct: 301 VSAATLNKTISLALEKETEVYSEENARFIHGHGVA 335
>AT1G23820.1 | chr1:8420278-8422724 FORWARD LENGTH=379
Length = 378
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 56 LNSVLHRGASKYQEIALIDTKHFGKALIIDGKMQSTEVDEFIYHESLIHPPLLFHPNPKT 115
+ VL +G S YQ++ + + +GK L++DG +Q TE DE Y E + H PL PNPK
Sbjct: 108 VEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKK 167
Query: 116 VFIMGGGEGSAAREVLRHNTVHRVVMCDIDQEVVDFCRTYLTVNWDAFASDKLCLIINDA 175
V ++GGG+G REV RH ++ ++ MC+ID+ VVD + + + ++ L+I D
Sbjct: 168 VLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG 227
Query: 176 RAELEKSRE-KFDVIVGDLADPVEGGPCYQLYTKSFYQHIVKPKLNDRGVFVTQAGPAGV 234
A L+ + E +D ++ D +DP+ GP +L+ K F+Q + + L GV TQA +
Sbjct: 228 VAFLKNAAEGSYDAVIVDSSDPI--GPAKELFEKPFFQSVAR-ALRPGGVVCTQA--ESL 282
Query: 235 LTHKEVFSSIYNTLRHVFKYVKAYT-AHVPSF-ADTWGWVMAS----DYPFSMNAQQINE 288
H ++ I + R +FK Y VP++ + G+++ S D F I+E
Sbjct: 283 WLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPDVDFKHPLNPIDE 342
Query: 289 RIKERIDGELVYLSGE 304
+ +G L + + E
Sbjct: 343 S-SSKSNGPLKFYNAE 357
>AT1G70310.1 | chr1:26485497-26487352 REVERSE LENGTH=341
Length = 340
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 133/260 (51%), Gaps = 14/260 (5%)
Query: 8 GIVREMNGGFEVMSGYDRSSMAPKQQQREEESKWYEEEIDDDLKLCYALNSVLHRGASKY 67
G + NGG E+ SS+ P E W E LK+ +L +G S Y
Sbjct: 27 GAMETENGGGEIKEPSCMSSIIPGWFS-EISPMWPGEA--HSLKV----EKILFQGKSDY 79
Query: 68 QEIALIDTKHFGKALIIDGKMQSTEVDEFIYHESLIHPPLLFHPNPKTVFIMGGGEGSAA 127
Q++ + + +GK L++DG +Q TE DE Y E + H PL NPK V ++GGG+G
Sbjct: 80 QDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVL 139
Query: 128 REVLRHNTVHRVVMCDIDQEVVDFCRTYLTVNWDAFASDKLCLIINDARAELEKSRE-KF 186
REV RH++V ++ +C+ID+ VVD + Y + ++ LII D A L+ + E +
Sbjct: 140 REVARHSSVEQIDICEIDKMVVDVAKQYFPNVAVGYEDPRVNLIIGDGVAFLKNAAEGTY 199
Query: 187 DVIVGDLADPVEGGPCYQLYTKSFYQHIVKPKLNDRGVFVTQAGPAGVLTHKEVFSSIYN 246
D ++ D +DP+ GP +L+ K F++ + + L GV TQA + H ++ I +
Sbjct: 200 DAVIVDSSDPI--GPAKELFEKPFFESVNR-ALRPGGVVCTQA--ESLWLHMDIIEDIVS 254
Query: 247 TLRHVFKYVKAYT-AHVPSF 265
R +FK Y VP++
Sbjct: 255 NCRDIFKGSVNYAWTSVPTY 274
>AT5G53120.6 | chr5:21535429-21537653 FORWARD LENGTH=387
Length = 386
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 128/274 (46%), Gaps = 35/274 (12%)
Query: 56 LNSVLHRGASKYQEIALIDTKHFGKALIIDGKMQSTEVDEFIYHESLIHPPLLFHPNPKT 115
+ VL + S +QE+ + ++ +GK L++DG +Q TE DE Y E + H PL +PK
Sbjct: 87 VEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSISSPKN 146
Query: 116 V------FIMGG---------------------GEGSAAREVLRHNTVHRVVMCDIDQEV 148
V F + G G+G RE+ RH++V + +C+ID+ V
Sbjct: 147 VISHLKKFSLSGFLYLVACCNKSVNLKVLVVGGGDGGVLREISRHSSVEVIDICEIDKMV 206
Query: 149 VDFCRTYLTVNWDAFASDKLCLIINDARAELEKSRE-KFDVIVGDLADPVEGGPCYQLYT 207
+D + + F ++ L I DA L KS E K+D I+ D +DPV GP L
Sbjct: 207 IDVSKKFFPELAVGFDDPRVQLHIGDAAEFLRKSPEGKYDAIIVDSSDPV--GPALALVE 264
Query: 208 KSFYQHIVKPKLNDRGVFVTQAGPAGVLTHKEVFSSIYNTLRHVFKYVKAYTAHVPSF-A 266
K F++ + + L GV A + H + + + R FK V + VP++ +
Sbjct: 265 KPFFETLAR-ALKPGGVLCNMA--ESMWLHTHLIEDMISICRQTFKSVHYAWSSVPTYPS 321
Query: 267 DTWGWVMASDYPFSMNAQQINERIKERIDGELVY 300
G+V+ S +++ + I E++DG + +
Sbjct: 322 GVIGFVLCSTEGPAVDFKNPINPI-EKLDGAMTH 354
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,839,063
Number of extensions: 337532
Number of successful extensions: 949
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 947
Number of HSP's successfully gapped: 4
Length of query: 344
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 245
Effective length of database: 8,392,385
Effective search space: 2056134325
Effective search space used: 2056134325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)