BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0353700 Os06g0353700|J065177D24
(149 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0353700 Conserved hypothetical protein 233 3e-62
Os04g0313300 Conserved hypothetical protein 150 3e-37
Os05g0155950 Conserved hypothetical protein 150 4e-37
Os12g0413201 Conserved hypothetical protein 149 5e-37
Os10g0470066 Conserved hypothetical protein 148 1e-36
Os07g0431950 137 2e-33
Os04g0259800 Conserved hypothetical protein 135 1e-32
Os09g0265050 Conserved hypothetical protein 97 5e-21
Os07g0262950 Conserved hypothetical protein 97 6e-21
Os05g0249800 76 8e-15
Os02g0300301 Conserved hypothetical protein 76 9e-15
Os10g0385550 Conserved hypothetical protein 76 9e-15
Os03g0809400 Conserved hypothetical protein 74 3e-14
>Os06g0353700 Conserved hypothetical protein
Length = 149
Score = 233 bits (595), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/149 (78%), Positives = 117/149 (78%)
Query: 1 MPNNFGFDPIPFHLLQQREHRHVMVALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRP 60
MPNNFGFDPIPFHLLQQREHRHVMVALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRP
Sbjct: 1 MPNNFGFDPIPFHLLQQREHRHVMVALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRP 60
Query: 61 PLYFPSRISKDGATSVEIVXXXXXXXXXXXXXXXXXIHHPWDLTNPMKTHACQFDEWIEX 120
PLYFPSRISKDGATSVEIV IHHPWDLTNPMKTHACQFDEWIE
Sbjct: 61 PLYFPSRISKDGATSVEIVHRLLHLRSPSPLSDSSRIHHPWDLTNPMKTHACQFDEWIEP 120
Query: 121 XXXXXXXXXXXXXXLHRCRCPDFHAPRSR 149
LHRCRCPDFHAPRSR
Sbjct: 121 LPSSRSSTPSLDHLLHRCRCPDFHAPRSR 149
>Os04g0313300 Conserved hypothetical protein
Length = 131
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 75/79 (94%)
Query: 1 MPNNFGFDPIPFHLLQQREHRHVMVALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRP 60
MPNNFGFDPIPFHLLQQRE RHVMVALE ALCTAA TSSPFPLIWTKP QAVAPASSPRP
Sbjct: 1 MPNNFGFDPIPFHLLQQRERRHVMVALERALCTAAATSSPFPLIWTKPDQAVAPASSPRP 60
Query: 61 PLYFPSRISKDGATSVEIV 79
PL+FPSRISKDGATSVEIV
Sbjct: 61 PLHFPSRISKDGATSVEIV 79
>Os05g0155950 Conserved hypothetical protein
Length = 126
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 75/79 (94%)
Query: 1 MPNNFGFDPIPFHLLQQREHRHVMVALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRP 60
M NNFGFDPIPFHLLQQRE RHVMVALE ALCTAA TSSPFPLIWTKPGQAVAPASSPRP
Sbjct: 1 MTNNFGFDPIPFHLLQQRERRHVMVALERALCTAAATSSPFPLIWTKPGQAVAPASSPRP 60
Query: 61 PLYFPSRISKDGATSVEIV 79
PL+FPSRISKDGATSVEIV
Sbjct: 61 PLHFPSRISKDGATSVEIV 79
>Os12g0413201 Conserved hypothetical protein
Length = 144
Score = 149 bits (377), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 75/79 (94%)
Query: 1 MPNNFGFDPIPFHLLQQREHRHVMVALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRP 60
M NNFGFDPIPFHLLQQRE RHVMVALE ALCTAA TSSPFPLIWTKPGQAVAPASSPRP
Sbjct: 1 MTNNFGFDPIPFHLLQQRERRHVMVALERALCTAAATSSPFPLIWTKPGQAVAPASSPRP 60
Query: 61 PLYFPSRISKDGATSVEIV 79
PL+FPSRISKDGATSVEIV
Sbjct: 61 PLHFPSRISKDGATSVEIV 79
>Os10g0470066 Conserved hypothetical protein
Length = 168
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/79 (92%), Positives = 75/79 (94%)
Query: 1 MPNNFGFDPIPFHLLQQREHRHVMVALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRP 60
M NNFGFDPIPFHLLQQRE RHVMVALE ALCTAA TSSPFPLIWTKPGQAVAPASSP+P
Sbjct: 43 MTNNFGFDPIPFHLLQQRERRHVMVALERALCTAAVTSSPFPLIWTKPGQAVAPASSPQP 102
Query: 61 PLYFPSRISKDGATSVEIV 79
PL+FPSRISKDGATSVEIV
Sbjct: 103 PLHFPSRISKDGATSVEIV 121
>Os07g0431950
Length = 126
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 70/79 (88%)
Query: 1 MPNNFGFDPIPFHLLQQREHRHVMVALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRP 60
MPNNFGFDPIPFHLLQQRE RHVMVAL ALCTAA TSS FPLIWT PGQAVAPASSPRP
Sbjct: 1 MPNNFGFDPIPFHLLQQRERRHVMVALGRALCTAAATSSQFPLIWTMPGQAVAPASSPRP 60
Query: 61 PLYFPSRISKDGATSVEIV 79
PL+FP RI KDGA SVEIV
Sbjct: 61 PLHFPLRILKDGAMSVEIV 79
>Os04g0259800 Conserved hypothetical protein
Length = 97
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/71 (92%), Positives = 67/71 (94%)
Query: 1 MPNNFGFDPIPFHLLQQREHRHVMVALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRP 60
MPNNFGFDPIPFHLLQQRE RHVMVALE ALCTAA TSSPFPLIWTKPGQAVAPA SPRP
Sbjct: 1 MPNNFGFDPIPFHLLQQRERRHVMVALERALCTAAATSSPFPLIWTKPGQAVAPAFSPRP 60
Query: 61 PLYFPSRISKD 71
PL+FPSRISKD
Sbjct: 61 PLHFPSRISKD 71
>Os09g0265050 Conserved hypothetical protein
Length = 153
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/54 (92%), Positives = 51/54 (94%)
Query: 26 ALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRPPLYFPSRISKDGATSVEIV 79
ALE ALCTAA TSSPFPLI TKPGQAVAPASSPRPPL+FPSRISKDGATSVEIV
Sbjct: 48 ALERALCTAAVTSSPFPLICTKPGQAVAPASSPRPPLHFPSRISKDGATSVEIV 101
>Os07g0262950 Conserved hypothetical protein
Length = 166
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/54 (90%), Positives = 50/54 (92%)
Query: 26 ALEHALCTAAGTSSPFPLIWTKPGQAVAPASSPRPPLYFPSRISKDGATSVEIV 79
ALE ALCTAA TSSPFPLIWTK GQAV PASSPRPPL+FPSRISKDGATSVEIV
Sbjct: 48 ALERALCTAAVTSSPFPLIWTKSGQAVTPASSPRPPLHFPSRISKDGATSVEIV 101
>Os05g0249800
Length = 166
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 36/53 (67%)
Query: 97 IHHPWDLTNPMKTHACQFDEWIEXXXXXXXXXXXXXXXLHRCRCPDFHAPRSR 149
IHHPWDLTNPMKTHACQFDEWIE L RCRCPDF APRSR
Sbjct: 107 IHHPWDLTNPMKTHACQFDEWIEPLPSSRSSTPSPDHLLLRCRCPDFPAPRSR 159
>Os02g0300301 Conserved hypothetical protein
Length = 166
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 36/53 (67%)
Query: 97 IHHPWDLTNPMKTHACQFDEWIEXXXXXXXXXXXXXXXLHRCRCPDFHAPRSR 149
IHHPWDLTNPMKTHACQFDEWIE L RCRCPDF APRSR
Sbjct: 107 IHHPWDLTNPMKTHACQFDEWIEPLPSSRSSTPSPDHLLLRCRCPDFPAPRSR 159
>Os10g0385550 Conserved hypothetical protein
Length = 170
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 36/53 (67%)
Query: 97 IHHPWDLTNPMKTHACQFDEWIEXXXXXXXXXXXXXXXLHRCRCPDFHAPRSR 149
IHHPWDLTNPMKTHACQFDEWIE L RCRCPDF APRSR
Sbjct: 107 IHHPWDLTNPMKTHACQFDEWIEPLPSSRSSTPSPDHLLLRCRCPDFPAPRSR 159
>Os03g0809400 Conserved hypothetical protein
Length = 173
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 35/53 (66%)
Query: 97 IHHPWDLTNPMKTHACQFDEWIEXXXXXXXXXXXXXXXLHRCRCPDFHAPRSR 149
IHHPWDLTNPMKTHACQFDEWIE LHRCR PDF A RSR
Sbjct: 116 IHHPWDLTNPMKTHACQFDEWIEPLPSSRSSTPSPDHLLHRCRSPDFPASRSR 168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,207,818
Number of extensions: 185714
Number of successful extensions: 1012
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 1002
Number of HSP's successfully gapped: 14
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)