Os03g0809400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0809400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.38 | 0.283 | 9.69 | 1.43 | 0.461 | -1.06 | -0.905 | 2.56 | 0.688 | 0.587 | 24.05 | 1235 | -- | -- |
| 39.09 | 0.291 | 9.76 | 0.75 | 0.467 | -0.842 | -0.754 | -- | 0.54 | 0.354 | 22.8 | 1158 | -- | -- |
| 39.76 | 0.294 | 9.7 | 1.36 | 0.45 | -1.02 | -- | 2.17 | 0.665 | 0.48 | 24.14 | 1256 | -- | -- |
| 41.36 | 0.3 | 9.76 | 0.788 | 0.48 | -0.867 | -- | -- | 0.542 | 0.397 | 23.03 | 1157 | -- | -- |
| 48.15 | 0.323 | 9.67 | 1.44 | -- | -0.929 | -- | 2.16 | 0.725 | -- | 23 | 1571 | -- | -- |
| 61.6 | 0.368 | 9.8 | 0.48 | 0.306 | -- | -0.875 | -- | 0.375 | 0.347 | -- | -- | -- | -- |
| 64.89 | 0.377 | 9.8 | 0.515 | 0.309 | -- | -- | -- | 0.38 | 0.199 | -- | -- | -- | -- |
| 50.8 | 0.332 | 9.75 | 0.796 | -- | -0.747 | -- | -- | 0.55 | -- | 22.54 | 1571 | -- | -- |
| 55.91 | 0.348 | 9.8 | -- | 0.45 | -0.66 | -- | -- | 0.361 | 0.415 | 25.31 | 1170 | -- | -- |
| 70.9 | 0.393 | 9.79 | 0.525 | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
| 71.88 | 0.397 | 9.81 | -- | 0.316 | -- | -- | -- | 0.323 | 0.287 | -- | -- | -- | -- |
| 65.83 | 0.378 | 9.8 | -- | -- | -0.529 | -- | -- | 0.367 | -- | 25.21 | 1499 | -- | -- |
| 78.16 | 0.413 | 9.8 | -- | -- | -- | -- | -- | 0.326 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 42 | 36.41 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 185 | 37.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 22 |
| 189 | 37.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 208 | 37.62 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 219 | 37.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 417 | 39.05 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 478 | 39.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 598 | 39.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 619 | 39.84 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 642 | 39.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 660 | 39.95 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 708 | 40.08 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 710 | 40.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 715 | 40.11 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 716 | 40.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 760 | 40.27 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 774 | 40.30 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 780 | 40.32 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 804 | 40.39 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 849 | 40.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 893 | 40.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 897 | 40.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 906 | 40.60 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 922 | 40.64 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 928 | 40.65 | wind | 5 | 43200 | > th | dose dependent | sin | 22 | NA |
| 931 | 40.66 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 959 | 40.72 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 968 | 40.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 1000 | 40.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |