Os04g0313300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0313300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.49 | 0.569 | 8.6 | -1.37 | 1.92 | -1.87 | 1.44 | 2.5 | 0.584 | 8.89 | 3.573 | 1472 | -- | -- |
| 152.4 | 0.575 | 8.6 | -1.08 | 1.94 | -1.99 | 1.2 | -- | 0.648 | 8.96 | 2.983 | 1461 | -- | -- |
| 152.35 | 0.575 | 8.61 | -1.31 | 2.01 | -1.8 | -- | 2.23 | 0.562 | 9.09 | 3.511 | 1445 | -- | -- |
| 157 | 0.584 | 8.6 | -1.05 | 2 | -1.97 | -- | -- | 0.649 | 9.14 | 2.925 | 1447 | -- | -- |
| 299.57 | 0.811 | 8.56 | -0.671 | -- | -1.19 | -- | -0.107 | 0.941 | -- | 3.511 | 1445 | -- | -- |
| 202.93 | 0.668 | 8.5 | -0.701 | 2.06 | -- | 0.988 | -- | 0.971 | 9.08 | -- | -- | -- | -- |
| 206.31 | 0.673 | 8.5 | -0.666 | 2.06 | -- | -- | -- | 0.973 | 9.12 | -- | -- | -- | -- |
| 299.64 | 0.81 | 8.56 | -0.672 | -- | -1.19 | -- | -- | 0.94 | -- | 3.511 | 1445 | -- | -- |
| 181.14 | 0.627 | 8.57 | -- | 1.98 | -1.47 | -- | -- | 0.686 | 9.23 | 6.004 | 1450 | -- | -- |
| 450.43 | 0.992 | 8.55 | -0.671 | -- | -- | -- | -- | 0.984 | -- | -- | -- | -- | -- |
| 217.99 | 0.691 | 8.48 | -- | 2.06 | -- | -- | -- | 1.05 | 9.14 | -- | -- | -- | -- |
| 309.05 | 0.821 | 8.54 | -- | -- | -1.23 | -- | -- | 1.02 | -- | 6.004 | 1450 | -- | -- |
| 462.3 | 1 | 8.54 | -- | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 3 | 145.67 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 5 | 146.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 6 | 146.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 10 | 146.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 11 | 146.38 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 23 | 147.50 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 24 | 147.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 32 | 148.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 36 | 148.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 37 | 148.18 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 67 | 148.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 100 | 149.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 105 | 149.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 143 | 149.88 | radiation | 10 | 1440 | > th | dose independent | sin | 20 | NA |
| 242 | 151.16 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 331 | 151.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 350 | 152.03 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 362 | 152.04 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 479 | 152.56 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 534 | 153.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 631 | 154.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 701 | 154.97 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 771 | 155.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 813 | 155.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 816 | 155.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 820 | 155.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 822 | 155.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 830 | 155.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 834 | 155.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 844 | 155.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 855 | 155.75 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 945 | 155.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 947 | 156.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 964 | 156.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 969 | 156.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 16 |