BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0347100 Os06g0347100|AK063762
(242 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0347100 Similar to Acyl-coenzyme A oxidase 4, peroxiso... 496 e-141
Os06g0346300 Acyl-CoA dehydrogenase family protein 435 e-122
Os05g0163700 Similar to Acyl-coenzyme A oxidase 4, peroxiso... 356 6e-99
Os01g0159400 Similar to Acyl-coenzyme A oxidase 4, peroxiso... 350 7e-97
AK071923 99 4e-21
Os05g0125500 Similar to Isovaleryl-CoA dehydrogenase, mitoc... 99 4e-21
>Os06g0347100 Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX
4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p)
(AtG6)
Length = 242
Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 VPGGWILNGQKRWPANGSFADVFVVLACNTSNNQINGFIVNGGSPGLKISKIENKTSLRV 60
VPGGWILNGQKRWPANGSFADVFVVLACNTSNNQINGFIVNGGSPGLKISKIENKTSLRV
Sbjct: 1 VPGGWILNGQKRWPANGSFADVFVVLACNTSNNQINGFIVNGGSPGLKISKIENKTSLRV 60
Query: 61 VQNCDILLEDVFVPDDDRLPGANSFQDLVKALSFSCVIVAWISIGIAAGVYDACLRYLGE 120
VQNCDILLEDVFVPDDDRLPGANSFQDLVKALSFSCVIVAWISIGIAAGVYDACLRYLGE
Sbjct: 61 VQNCDILLEDVFVPDDDRLPGANSFQDLVKALSFSCVIVAWISIGIAAGVYDACLRYLGE 120
Query: 121 RKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWITKQA 180
RKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWITKQA
Sbjct: 121 RKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWITKQA 180
Query: 181 RETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREITGIASIRPTS 240
RETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREITGIASIRPTS
Sbjct: 181 RETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREITGIASIRPTS 240
Query: 241 RL 242
RL
Sbjct: 241 RL 242
>Os06g0346300 Acyl-CoA dehydrogenase family protein
Length = 304
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/264 (82%), Positives = 225/264 (85%), Gaps = 31/264 (11%)
Query: 1 VPGGWILNGQKRWPANGSFADVFVVLACNTSNNQINGFIVNGGSPGLKISKIENKTSLRV 60
VPGGWILNGQKRWPAN SFAD+FVVLACNTS NQINGFIVNGG+PGLKISKI+NK SLRV
Sbjct: 50 VPGGWILNGQKRWPANSSFADIFVVLACNTSTNQINGFIVNGGAPGLKISKIDNKMSLRV 109
Query: 61 VQNCDILLEDVFVPDDDRLPGANSFQDLVK----------------------ALSFSCVI 98
VQNCDILLEDVFVPDDDRLPGANSFQDLVK ALSFS VI
Sbjct: 110 VQNCDILLEDVFVPDDDRLPGANSFQDLVKIYSISPHTIGDTDLTDYVAYIQALSFSRVI 169
Query: 99 VAWISIGIAAGVYDACLRYLGERKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKL 158
VAWISIGIAAGVYDACLRYLGERKQFGAPLAAFQLNQEKL MWLLGWRL +L
Sbjct: 170 VAWISIGIAAGVYDACLRYLGERKQFGAPLAAFQLNQEKL---------MWLLGWRLYEL 220
Query: 159 HDSGRMTTGQASLGKAWITKQARETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGS 218
HDSGRMTTGQASLGKAWITK+ARETVALGRELLGGNGIVTDFHVGKAFCDMES+YTYEGS
Sbjct: 221 HDSGRMTTGQASLGKAWITKKARETVALGRELLGGNGIVTDFHVGKAFCDMESLYTYEGS 280
Query: 219 YEVNVLVAAREITGIASIRPTSRL 242
YEVN L+ AR+ITGIASIRP SRL
Sbjct: 281 YEVNALIVARDITGIASIRPASRL 304
>Os05g0163700 Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX
4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p)
(AtG6)
Length = 430
Score = 356 bits (914), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 165/240 (68%), Positives = 198/240 (82%)
Query: 1 VPGGWILNGQKRWPANGSFADVFVVLACNTSNNQINGFIVNGGSPGLKISKIENKTSLRV 60
VPGGW L+GQKRW NG+FADV ++LA N+ NQ+NGFIV G+PGLK +KIENK LR+
Sbjct: 185 VPGGWHLDGQKRWIGNGTFADVLIILARNSDTNQLNGFIVKKGAPGLKCTKIENKIGLRM 244
Query: 61 VQNCDILLEDVFVPDDDRLPGANSFQDLVKALSFSCVIVAWISIGIAAGVYDACLRYLGE 120
VQN DI+L VFVPD+DRL G NSFQD+ K L+ S ++VAW IGI+ GV+D C RYL E
Sbjct: 245 VQNADIVLNKVFVPDEDRLTGINSFQDINKVLAMSRIMVAWQPIGISMGVFDMCHRYLKE 304
Query: 121 RKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWITKQA 180
RKQFG PLAAFQLNQEKLVRMLGNIQAM L+GWRLCKL++SG+MT G ASLGKAW +K+A
Sbjct: 305 RKQFGVPLAAFQLNQEKLVRMLGNIQAMLLVGWRLCKLYESGKMTPGHASLGKAWTSKKA 364
Query: 181 RETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREITGIASIRPTS 240
RE V+LGRELLGGNGI+ DF V KAFCD+E I++YEG+Y++N LV REITGIAS +P +
Sbjct: 365 REVVSLGRELLGGNGILADFLVAKAFCDLEPIFSYEGTYDINSLVTGREITGIASFKPAA 424
>Os01g0159400 Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX
4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p)
(AtG6)
Length = 433
Score = 350 bits (897), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 162/240 (67%), Positives = 193/240 (80%)
Query: 1 VPGGWILNGQKRWPANGSFADVFVVLACNTSNNQINGFIVNGGSPGLKISKIENKTSLRV 60
VPGGW ++GQKRW N +FADV VVLA N + Q+NGFIV G+PGLK +KIENK LR+
Sbjct: 188 VPGGWHIDGQKRWIGNSTFADVLVVLARNANTKQLNGFIVRKGAPGLKATKIENKIGLRM 247
Query: 61 VQNCDILLEDVFVPDDDRLPGANSFQDLVKALSFSCVIVAWISIGIAAGVYDACLRYLGE 120
VQN DI+ VFVP++DRLPG NSFQD+ K L+ S V+VAW IGI+ GV+D C RYL E
Sbjct: 248 VQNGDIVFNKVFVPEEDRLPGVNSFQDISKVLAISRVMVAWQPIGISMGVFDVCHRYLKE 307
Query: 121 RKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWITKQA 180
RKQFG PL AFQLNQEKLVRMLGNIQAM L+GWRLCKL++SG+MT G ASLGK W ++ A
Sbjct: 308 RKQFGVPLVAFQLNQEKLVRMLGNIQAMLLVGWRLCKLYESGKMTPGHASLGKGWTSRMA 367
Query: 181 RETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREITGIASIRPTS 240
RE V+LGRELLGGNGI+ DF V KAFCD+E IY+YEG+Y++N LV REITGIAS +P +
Sbjct: 368 REVVSLGRELLGGNGILADFLVAKAFCDLEPIYSYEGTYDINSLVTGREITGIASFKPAA 427
>AK071923
Length = 358
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 4/234 (1%)
Query: 1 VPGGWILNGQKRWPANGSFADVFVVLACN---TSNNQINGFIVNGGSPGLKISKIENKTS 57
V GG+++NG K W NG A VV A + I FI+ G PG ++ +K
Sbjct: 121 VDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLG 180
Query: 58 LRVVQNCDILLEDVFVPDDDRL-PGANSFQDLVKALSFSCVIVAWISIGIAAGVYDACLR 116
+R C+++ E+ FVP ++ L ++ L +++A IG+ D +
Sbjct: 181 MRGSDTCELVFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVP 240
Query: 117 YLGERKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWI 176
Y+ +R+QFG P+ FQ Q KL M ++Q+ + + + D+G++ + +
Sbjct: 241 YVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFA 300
Query: 177 TKQARETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREI 230
++A + + LGGNG + ++ G+ D + G+ E+ ++ RE+
Sbjct: 301 AERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGREL 354
>Os05g0125500 Similar to Isovaleryl-CoA dehydrogenase, mitochondrial precursor
(EC 1.3.99.10) (IVD)
Length = 409
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 4/234 (1%)
Query: 1 VPGGWILNGQKRWPANGSFADVFVVLACN---TSNNQINGFIVNGGSPGLKISKIENKTS 57
V GG+++NG K W NG A VV A + I FI+ G PG ++ +K
Sbjct: 172 VDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLG 231
Query: 58 LRVVQNCDILLEDVFVPDDDRL-PGANSFQDLVKALSFSCVIVAWISIGIAAGVYDACLR 116
+R C+++ E+ FVP ++ L ++ L +++A IG+ D +
Sbjct: 232 MRGSDTCELVFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVP 291
Query: 117 YLGERKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWI 176
Y+ +R+QFG P+ FQ Q KL M ++Q+ + + + D+G++ + +
Sbjct: 292 YVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFA 351
Query: 177 TKQARETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREI 230
++A + + LGGNG + ++ G+ D + G+ E+ ++ RE+
Sbjct: 352 AERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGREL 405
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,567,293
Number of extensions: 339695
Number of successful extensions: 598
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 6
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)