BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0303400 Os06g0303400|Os06g0303400
(766 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0303400 Similar to Aconitate hydratase, cytoplasmic (E... 1558 0.0
Os03g0136900 Similar to Aconitate hydratase, cytoplasmic (E... 1054 0.0
Os09g0449600 Similar to Aconitate hydratase, cytoplasmic (E... 76 7e-14
Os02g0125100 Cis-homoaconitase family protein 72 1e-12
>Os06g0303400 Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
hydro-lyase) (Aconitase)
Length = 766
Score = 1558 bits (4034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 752/766 (98%), Positives = 752/766 (98%)
Query: 1 MSPPRTNMYAHLCSPGSPLVATMLHHVHSTGQQDNTGVPAIVDLAAMRDVMAKLGCDPYQ 60
MSPPRTNMYAHLCSPGSPLVATMLHHVHSTGQQDNTGVPAIVDLAAMRDVMAKLGCDPYQ
Sbjct: 1 MSPPRTNMYAHLCSPGSPLVATMLHHVHSTGQQDNTGVPAIVDLAAMRDVMAKLGCDPYQ 60
Query: 61 INPLIPXXXXXXXXXXXXXXRSHDALDKNMELEFDRNKERFGFLKWASTAFHKMQVFPPG 120
INPLIP RSHDALDKNMELEFDRNKERFGFLKWASTAFHKMQVFPPG
Sbjct: 61 INPLIPVDVVIDHAVRVDVVRSHDALDKNMELEFDRNKERFGFLKWASTAFHKMQVFPPG 120
Query: 121 SGIVHQVNLEYLARVVFNADGIMYPDSVVGTDSHTTMINSLGVAGWGVGGIEAIVAMLGQ 180
SGIVHQVNLEYLARVVFNADGIMYPDSVVGTDSHTTMINSLGVAGWGVGGIEAIVAMLGQ
Sbjct: 121 SGIVHQVNLEYLARVVFNADGIMYPDSVVGTDSHTTMINSLGVAGWGVGGIEAIVAMLGQ 180
Query: 181 PMDMVLPGVVGFKLSGMLRDGVTATDLVLTITQMLRKHGVVGKFVEFYGVGVGELSLPAR 240
PMDMVLPGVVGFKLSGMLRDGVTATDLVLTITQMLRKHGVVGKFVEFYGVGVGELSLPAR
Sbjct: 181 PMDMVLPGVVGFKLSGMLRDGVTATDLVLTITQMLRKHGVVGKFVEFYGVGVGELSLPAR 240
Query: 241 ATIANMSPEYGASMGFFPVDHVTLDYLKLTGRSNETVSMIEAYLRANNMFVEHHEPHTER 300
ATIANMSPEYGASMGFFPVDHVTLDYLKLTGRSNETVSMIEAYLRANNMFVEHHEPHTER
Sbjct: 241 ATIANMSPEYGASMGFFPVDHVTLDYLKLTGRSNETVSMIEAYLRANNMFVEHHEPHTER 300
Query: 301 VYSSYLELNLIDVEPCISGPKRPHDRVPLKEMKSDWHACLDSRVGFKGFAVPRECQDKVV 360
VYSSYLELNLIDVEPCISGPKRPHDRVPLKEMKSDWHACLDSRVGFKGFAVPRECQDKVV
Sbjct: 301 VYSSYLELNLIDVEPCISGPKRPHDRVPLKEMKSDWHACLDSRVGFKGFAVPRECQDKVV 360
Query: 361 KFDFQGQPAEIKHGSVVLAAICSSTNTSNPSVIVGAGLVAKKACELGLEGLPFRFRSKNR 420
KFDFQGQPAEIKHGSVVLAAICSSTNTSNPSVIVGAGLVAKKACELGLEGLPFRFRSKNR
Sbjct: 361 KFDFQGQPAEIKHGSVVLAAICSSTNTSNPSVIVGAGLVAKKACELGLEGLPFRFRSKNR 420
Query: 421 SSPVYRKQVKPWVKTSFTHGSAVTREYLKHSHLQDYLNQQGFHLAAFGCATCVGNSGDLD 480
SSPVYRKQVKPWVKTSFTHGSAVTREYLKHSHLQDYLNQQGFHLAAFGCATCVGNSGDLD
Sbjct: 421 SSPVYRKQVKPWVKTSFTHGSAVTREYLKHSHLQDYLNQQGFHLAAFGCATCVGNSGDLD 480
Query: 481 ESVSAAITENDIVSVAVLSANRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEP 540
ESVSAAITENDIVSVAVLSANRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEP
Sbjct: 481 ESVSAAITENDIVSVAVLSANRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEP 540
Query: 541 IGHGKDGNEVYLRDIWPTNEEIEQVVKSSVLPHMFTQTYESIKRCNRRWNELRVPGEAAA 600
IGHGKDGNEVYLRDIWPTNEEIEQVVKSSVLPHMFTQTYESIKRCNRRWNELRVPGEAAA
Sbjct: 541 IGHGKDGNEVYLRDIWPTNEEIEQVVKSSVLPHMFTQTYESIKRCNRRWNELRVPGEAAA 600
Query: 601 LYPWDPSSTYIRKPPYLEGMAMSPPSRPRSVRDAYCLLNLGDSVTTDHISYSGSITPGSA 660
LYPWDPSSTYIRKPPYLEGMAMSPPSRPRSVRDAYCLLNLGDSVTTDHISYSGSITPGSA
Sbjct: 601 LYPWDPSSTYIRKPPYLEGMAMSPPSRPRSVRDAYCLLNLGDSVTTDHISYSGSITPGSA 660
Query: 661 AAEYLRAAGVADRERLGSYGGRRGNDEVVVRGAFANARIVNKLMNGKVGPKTVHVPTGEE 720
AAEYLRAAGVADRERLGSYGGRRGNDEVVVRGAFANARIVNKLMNGKVGPKTVHVPTGEE
Sbjct: 661 AAEYLRAAGVADRERLGSYGGRRGNDEVVVRGAFANARIVNKLMNGKVGPKTVHVPTGEE 720
Query: 721 LCVFDAAIKYKSEGHNMVIVIAGAEYGSGSSRDSAAKGPMLLTTVV 766
LCVFDAAIKYKSEGHNMVIVIAGAEYGSGSSRDSAAKGPMLLTTVV
Sbjct: 721 LCVFDAAIKYKSEGHNMVIVIAGAEYGSGSSRDSAAKGPMLLTTVV 766
>Os03g0136900 Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
hydro-lyase) (Aconitase)
Length = 986
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/729 (70%), Positives = 586/729 (80%), Gaps = 24/729 (3%)
Query: 33 QDNTGVPAIVDLAAMRDVMAKLGCDPYQINPLIPXXXXXXXXXXXXXXRSHDALDKNMEL 92
QD TGVPA+VDLA MRD M+KLG DP +INPL+P RS +A+ NMEL
Sbjct: 178 QDFTGVPAVVDLACMRDAMSKLGSDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMEL 237
Query: 93 EFDRNKERFGFLKWASTAFHKMQVFPPGSGIVHQVNLEYLARVVFNADGIMYPDSVVGTD 152
EF RNKERFGFLKW STAF M V PPGSGIVHQVNLEYLARVVFN GI+YPDSVVGTD
Sbjct: 238 EFHRNKERFGFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLARVVFNNGGILYPDSVVGTD 297
Query: 153 SHTTMINSLGVAGWGVGGIEAIVAMLGQPMDMVLPGVVGFKLSGMLRDGVTATDLVLTIT 212
SHTTMI+ LGVAGWGVGGIEA MLGQPM MVLPGVVGFKL+G LR+GVTATDLVLT+T
Sbjct: 298 SHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLTGKLRNGVTATDLVLTVT 357
Query: 213 QMLRKHGVVGKFVEFYGVGVGELSLPARATIANMSPEYGASMGFFPVDHVTLDYLKLTGR 272
QMLRKHGVVGKFVEFYG G+ ELSL RATIANMSPEYGA+MGFFPVD TLDYLKLTGR
Sbjct: 358 QMLRKHGVVGKFVEFYGGGMSELSLADRATIANMSPEYGATMGFFPVDGKTLDYLKLTGR 417
Query: 273 SNETVSMIEAYLRANNMFVEHHEPHTERVYSSYLELNLIDVEPCISGPKRPHDRVPLKEM 332
S++TV+MIE+YLRAN MFV++++P ERVYSSYLELNL +VEPC+SGPKRPHDRV LK M
Sbjct: 418 SDDTVAMIESYLRANKMFVDYNQPEAERVYSSYLELNLEEVEPCLSGPKRPHDRVTLKNM 477
Query: 333 KSDWHACLDSRVGFKGFAVPRECQDKVVKFDFQGQPAEIKHGSVVLAAICSSTNTSNPSV 392
KSDW +CLD+ VGFKGFAVP+E Q KV +F F G PA++KHG VV+AAI S TNTSNP+V
Sbjct: 478 KSDWLSCLDNDVGFKGFAVPKESQGKVAEFSFHGTPAKLKHGDVVIAAITSCTNTSNPNV 537
Query: 393 IVGAGLVAKKACELGLEGLPFRFRSKNRSSPVYRKQVKPWVKTSFTHGSAVTREYLKHSH 452
++GA LVAKKACELGLE VKPW+KTS GS V ++YL S
Sbjct: 538 MLGAALVAKKACELGLE-------------------VKPWIKTSLAPGSGVVKKYLDKSG 578
Query: 453 LQDYLNQQGFHLAAFGCATCVGNSGDLDESVSAAITENDIVSVAVLSANRNFEGRVHPLT 512
LQ YL+Q GFH+ +GC TC+GNSG+LDE+VSAAI++NDIV+ AVLS NRNFEGRVH LT
Sbjct: 579 LQKYLDQLGFHIVGYGCTTCIGNSGELDETVSAAISDNDIVAAAVLSGNRNFEGRVHALT 638
Query: 513 RANYLASPPLVVAYALAGTVDIDFEKEPIGHGKDGNEVYLRDIWPTNEEIEQVVKSSVLP 572
RANYLASPPLVVAYALAGTV+IDFEKEPIG KDG EVY RDIWP+ EEI +VVKSSVLP
Sbjct: 639 RANYLASPPLVVAYALAGTVNIDFEKEPIGISKDGKEVYFRDIWPSTEEIAEVVKSSVLP 698
Query: 573 HMFTQTYESIKRCNRRWNELRVPGEAAALYPWDPSSTYIRKPPYLEGMAMSPPSRPRSVR 632
MF TYE+I + N WNEL V A+ LYPWDP+STYI +PPY + M MSPP PR V+
Sbjct: 699 DMFKSTYEAITKGNPMWNELSV--SASTLYPWDPTSTYIHEPPYFKDMTMSPPG-PRPVK 755
Query: 633 DAYCLLNLGDSVTTDHISYSGSITPGSAAAEYLRAAGVADRERLGSYGGRRGNDEVVVRG 692
DAYCLLN GDS+TTDHIS +GSI P S AA YL+ GV +R+ SYG RRGNDE++ RG
Sbjct: 756 DAYCLLNFGDSITTDHISPAGSIHPDSPAARYLKERGV-ERKDFNSYGSRRGNDEIMARG 814
Query: 693 AFANARIVNKLMNGKVGPKTVHVPTGEELCVFDAAIKYKSEGHNMVIVIAGAEYGSGSSR 752
FAN R+VNK + G+VGPKT+H+P+GE+L VFDAA KYK+EGH+ I++AGAEYGSGSSR
Sbjct: 815 TFANIRLVNKFLKGEVGPKTIHIPSGEKLSVFDAATKYKNEGHD-TIILAGAEYGSGSSR 873
Query: 753 DSAAKGPML 761
D AAKGPML
Sbjct: 874 DWAAKGPML 882
>Os09g0449600 Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
hydro-lyase) (Aconitase)
Length = 47
Score = 76.3 bits (186), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 312 DVEPCISGPKRPHDRVPLKEMKSDWHACLDSRVGFKGFAVPRECQ 356
DVEPCISGPK PHDRVPLKEMKSDWHACLDS FK +AV + Q
Sbjct: 1 DVEPCISGPKSPHDRVPLKEMKSDWHACLDS--NFKQYAVTQTHQ 43
>Os02g0125100 Cis-homoaconitase family protein
Length = 514
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 87/211 (41%), Gaps = 19/211 (9%)
Query: 126 QVNLEY--LARVVFNADGIMYPDSVV-GTDSHTTMINSLGVAGWGVGGIEAIVAMLGQPM 182
+ N +Y + V +G P V+ GTDSHT + G G+G +A M
Sbjct: 175 KANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCNAGAFGQFATGIGNTDAGFVMGTGKA 234
Query: 183 DMVLPGVVGFKLSGMLRDGVTATDLVLTITQMLRKHGVVGKFVEFYGVGVGELSLPARAT 242
+ +P + F L G + + A DL+L I + G K +EF G V L++ R T
Sbjct: 235 LLKVPPTIRFVLDGEMPPYLLAKDLILQIIGEISVSGATYKSMEFVGSTVESLNMEERMT 294
Query: 243 IANMSPEYGASMGFFPVDHVTLDYLKLTGRSNETVSMIEAYLRANNMFVEHHEPHTERVY 302
+ NM E G G P D T +YL+ +V Y A FV +
Sbjct: 295 LCNMVIEAGGKNGVVPADQTTFNYLE----GKTSVEYEPVYSDAQARFVSDY-------- 342
Query: 303 SSYLELNLIDVEPCISGPKRPHDRVPLKEMK 333
++ +EP I+ P P +R +E K
Sbjct: 343 ----RFDVSKLEPVIAKPHSPDNRALARECK 369
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,288,876
Number of extensions: 1185639
Number of successful extensions: 2820
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2814
Number of HSP's successfully gapped: 4
Length of query: 766
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 657
Effective length of database: 11,344,475
Effective search space: 7453320075
Effective search space used: 7453320075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)