FiT-DB / Search/ Help/ Sample detail

Os06g0303400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.61 (0.0213) R2 : 0.812
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.42 (0.0565) R2dC : 0.304 R2C : 0.494
β3 : -1.8 (0.0729) R2dE : 0.292 R2E : 0.46
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.522 (0.0451) R2dN8 : 0.0614 R2N8 : 0.00654
σ : 0.398
deviance : 73.13
__
_____
C
peak time of C : 21
E
wheather : temperature
threshold : 8.603
memory length : 282
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.7
open length of G : 17.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.6 0.389 9.58 0.451 1.4 -1.86 -0.00677 1.05 0.558 21.1 9.471 279 17.8 17.2
69.95 0.39 9.6 0.363 1.42 -1.84 -0.134 -- 0.532 21.1 9.289 279 17.7 17.3
68.34 0.385 9.58 0.476 1.43 -1.85 -- 1.15 0.562 21.1 8.734 290 17.6 17.4
70 0.39 9.6 0.366 1.41 -1.85 -- -- 0.528 21.1 9.104 280 17.7 17.3
105.78 0.479 9.56 0.399 -- -2.64 -- 0.767 0.518 -- -4.572 512 18.1 16.9
121.66 0.517 9.66 0.122 2.21 -- -0.357 -- 0.351 19.4 -- -- -- --
122.01 0.517 9.66 0.129 2.21 -- -- -- 0.35 19.4 -- -- -- --
99.94 0.466 9.58 0.38 -- -2.31 -- -- 0.504 -- 3.107 336 20.8 14.3
73.13 0.398 9.61 -- 1.42 -1.8 -- -- 0.522 21 8.603 282 17.7 17.3
381 0.912 9.61 0.0935 -- -- -- -- 0.314 -- -- -- -- --
122.45 0.518 9.66 -- 2.2 -- -- -- 0.336 19.4 -- -- -- --
102 0.47 9.58 -- -- -2.38 -- -- 0.441 -- 2.621 343 20.8 14.2
381.23 0.911 9.61 -- -- -- -- -- 0.304 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.10 temperature 10.0 270 > th dose dependent rect. 18 17
17 77.41 temperature 10.0 270 > th dose dependent rect. 4 8
22 78.74 temperature 15.0 10 > th dose dependent rect. 20 18
109 85.04 radiation 1.0 270 > th dose independent rect. 17 20
124 85.82 temperature 15.0 10 > th dose dependent rect. 6 8
135 86.53 precipitation 0.1 270 < th dose independent rect. 17 18
136 86.53 precipitation 0.1 270 < th dose dependent rect. 17 18
142 86.65 temperature 10.0 270 > th dose dependent rect. 17 7
150 86.91 humidity 60.0 270 > th dose independent rect. 18 17
162 87.27 wind 7.0 270 < th dose independent rect. 18 17
165 87.33 wind 9.0 270 < th dose independent rect. 11 7
167 87.39 radiation 10.0 43200 < th dose dependent rect. 20 7
171 87.48 temperature 10.0 270 > th dose independent rect. 11 7
172 87.48 atmosphere 1015.0 270 < th dose independent rect. 11 7
173 87.48 temperature 10.0 270 > th dose independent rect. 18 17
189 87.71 radiation 30.0 270 < th dose dependent rect. 22 9
191 87.74 precipitation 0.1 270 < th dose independent rect. 11 6
192 87.74 precipitation 0.1 270 < th dose dependent rect. 11 6
198 87.80 atmosphere 995.0 270 > th dose independent rect. 18 17
199 87.82 radiation 1.0 270 > th dose independent rect. 18 18
212 88.05 wind 1.0 270 > th dose independent rect. 11 6
216 88.12 atmosphere 995.0 270 > th dose independent rect. 11 6
219 88.15 temperature 30.0 270 < th dose dependent rect. 23 7
225 88.37 radiation 1.0 270 < th dose independent rect. 22 17
229 88.43 radiation 1.0 270 > th dose independent rect. 5 7
241 88.47 temperature 15.0 270 > th dose independent rect. 7 15
257 88.79 radiation 1.0 270 < th dose independent rect. 22 11
266 88.97 temperature 10.0 270 > th dose independent rect. 22 9
267 88.97 temperature 30.0 270 < th dose independent rect. 22 9
268 88.97 humidity 50.0 270 > th dose independent rect. 22 9
270 88.97 atmosphere 995.0 270 > th dose independent rect. 22 9
271 88.97 radiation 40.0 270 < th dose independent rect. 22 9
273 88.97 atmosphere 1015.0 270 < th dose independent rect. 7 15
275 88.98 wind 9.0 270 < th dose independent rect. 22 9
305 89.27 radiation 40.0 270 < th dose independent rect. 18 17
313 89.32 precipitation 0.1 270 < th dose independent rect. 7 15
316 89.32 precipitation 0.1 270 < th dose dependent rect. 7 15
339 89.42 humidity 90.0 270 < th dose independent rect. 12 5
344 89.43 atmosphere 1015.0 270 < th dose independent rect. 18 17
346 89.46 precipitation 0.1 270 < th dose independent rect. 17 6
347 89.46 precipitation 0.1 270 < th dose dependent rect. 17 6
352 89.52 temperature 10.0 270 > th dose independent rect. 17 6
353 89.52 radiation 20.0 270 < th dose independent rect. 17 6
356 89.52 temperature 10.0 270 > th dose independent rect. 23 18
362 89.60 wind 9.0 270 < th dose independent rect. 17 6
364 89.64 radiation 1.0 270 < th dose dependent rect. 22 18
365 89.65 wind 9.0 270 < th dose independent rect. 23 18
380 89.73 atmosphere 1015.0 270 < th dose independent rect. 17 6
393 89.87 temperature 20.0 270 > th dose independent rect. 5 7
395 89.88 wind 9.0 270 < th dose independent rect. 7 15
398 89.91 atmosphere 995.0 270 > th dose dependent rect. 12 5
400 89.92 radiation 40.0 270 < th dose dependent rect. 17 6
402 89.94 temperature 25.0 90 > th dose independent rect. 19 18
403 89.94 atmosphere 995.0 270 > th dose independent rect. 23 18
414 90.04 humidity 50.0 270 > th dose independent rect. 17 6
418 90.11 radiation 1.0 270 < th dose dependent rect. 22 11
441 90.27 atmosphere 1015.0 270 < th dose independent rect. 24 17
453 90.36 wind 1.0 270 > th dose independent rect. 17 6
470 90.47 radiation 1.0 270 < th dose dependent sin 6 NA
476 90.52 precipitation 0.1 270 < th dose independent rect. 22 9
477 90.52 precipitation 0.1 270 < th dose dependent rect. 22 9
485 90.61 atmosphere 995.0 270 > th dose independent rect. 17 6
503 90.79 humidity 90.0 90 < th dose independent rect. 6 8
504 90.80 temperature 20.0 30 > th dose dependent sin 6 NA
509 90.86 radiation 1.0 270 > th dose independent sin 7 NA
515 90.89 radiation 1.0 270 < th dose independent sin 7 NA
521 90.94 precipitation 0.1 270 < th dose independent rect. 23 18
523 90.94 precipitation 0.1 270 < th dose dependent rect. 23 18
528 90.98 temperature 10.0 10 > th dose dependent rect. 8 16
530 91.01 precipitation 0.1 270 < th dose independent rect. 4 9
531 91.01 precipitation 0.1 270 < th dose dependent rect. 4 9
552 91.11 atmosphere 995.0 270 > th dose dependent rect. 11 7
590 91.38 wind 7.0 270 < th dose independent rect. 5 7
613 91.52 temperature 30.0 10 < th dose dependent rect. 24 8
621 91.58 temperature 10.0 270 > th dose independent rect. 4 9
622 91.58 atmosphere 995.0 270 > th dose independent rect. 4 9
623 91.58 atmosphere 1015.0 270 < th dose independent rect. 4 9
624 91.58 temperature 10.0 270 > th dose independent rect. 13 15
635 91.63 wind 9.0 270 < th dose independent rect. 13 15
644 91.67 radiation 1.0 270 > th dose independent rect. 11 6
645 91.68 precipitation 0.1 270 < th dose independent rect. 5 7
647 91.68 precipitation 0.1 270 < th dose dependent rect. 5 7
648 91.69 wind 9.0 270 < th dose independent rect. 4 9
660 91.78 wind 9.0 270 < th dose independent rect. 12 17
669 91.81 humidity 50.0 270 > th dose independent rect. 4 9
690 91.89 temperature 30.0 10 < th dose dependent rect. 24 18
692 91.91 atmosphere 995.0 270 > th dose independent rect. 5 7
693 91.91 atmosphere 1015.0 270 < th dose independent rect. 5 7
694 91.91 temperature 10.0 270 > th dose independent rect. 12 17
707 91.99 humidity 50.0 270 > th dose dependent rect. 22 8
734 92.11 temperature 30.0 90 < th dose dependent rect. 1 8
754 92.23 atmosphere 1015.0 270 < th dose dependent rect. 17 6
787 92.34 temperature 30.0 10 < th dose dependent rect. 24 10
821 92.46 humidity 90.0 270 < th dose independent rect. 6 5
828 92.51 temperature 10.0 270 > th dose dependent rect. 6 17
830 92.53 radiation 30.0 270 < th dose independent rect. 7 16
861 92.65 wind 1.0 270 > th dose independent rect. 7 15
879 92.72 atmosphere 995.0 270 > th dose independent rect. 12 17
906 92.81 atmosphere 1015.0 270 < th dose independent rect. 18 4
912 92.83 temperature 20.0 10 > th dose dependent rect. 1 13
929 92.92 humidity 60.0 270 > th dose independent rect. 6 5
934 92.94 temperature 30.0 90 < th dose dependent rect. 1 16
950 93.04 atmosphere 1000.0 10 > th dose independent rect. 14 18
954 93.07 wind 1.0 270 > th dose independent rect. 18 4
972 93.15 radiation 10.0 270 < th dose independent rect. 9 14
982 93.20 humidity 90.0 10 < th dose independent rect. 7 7
985 93.22 radiation 10.0 270 < th dose independent rect. 18 4
999 93.26 humidity 50.0 270 > th dose independent rect. 18 4