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Os03g0136900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0185) R2 : 0.00176
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.035 (0.0389) R2dN8 : 0.00228 R2N8 : 0.00176
σ : 0.348
deviance : 55.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.88 0.285 11.9 -0.285 0.517 0.227 0.17 -1.07 -0.0249 18.2 77.7 11 -- --
40.95 0.298 11.9 -0.328 0.535 0.255 0.667 -- -0.0327 17.5 76.01 7 -- --
36.95 0.283 11.9 -0.286 0.516 0.225 -- -1.1 -0.0246 18.2 77.53 11 -- --
41.69 0.301 11.9 -0.333 0.508 0.176 -- -- -0.0394 18.2 77.96 13 -- --
48.39 0.326 11.9 -0.287 -- 0.0275 -- -1.06 -0.0609 -- 78 13 -- --
42.5 0.306 11.9 -0.319 0.44 -- 0.143 -- -0.064 19.1 -- -- -- --
42.54 0.305 11.9 -0.323 0.44 -- -- -- -0.064 19.2 -- -- -- --
48.57 0.325 11.9 -0.287 -- -0.336 -- -- -0.0791 -- 66 450 -- --
44.56 0.311 11.9 -- 0.506 0.164 -- -- -0.00657 18.2 75 13 -- --
52.78 0.339 11.9 -0.331 -- -- -- -- -0.0717 -- -- -- -- --
45.29 0.315 11.9 -- 0.443 -- -- -- -0.0281 19.1 -- -- -- --
51.2 0.333 11.9 -- -- -0.353 -- -- -0.0585 -- 65.56 465 -- --
55.67 0.348 11.9 -- -- -- -- -- -0.035 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.88 radiation 1.0 1440 < th dose independent rect. 8 5
2 35.88 radiation 1.0 1440 < th dose dependent rect. 8 5
3 35.91 radiation 1.0 1440 < th dose dependent rect. 8 9
4 35.92 radiation 1.0 1440 > th dose independent rect. 9 4
24 36.31 radiation 1.0 1440 < th dose independent rect. 8 9
35 36.37 humidity 90.0 10 < th dose independent rect. 2 10
41 36.44 humidity 80.0 10 > th dose dependent rect. 5 23
87 36.69 radiation 1.0 1440 < th dose independent rect. 8 20
90 36.70 radiation 1.0 1440 > th dose independent rect. 9 1
92 36.70 radiation 1.0 1440 < th dose independent rect. 8 18
96 36.71 radiation 1.0 1440 < th dose independent rect. 8 11
100 36.71 radiation 1.0 1440 < th dose independent rect. 8 16
120 36.75 temperature 15.0 10 > th dose dependent rect. 4 8
121 36.76 humidity 90.0 10 < th dose independent rect. 4 18
124 36.77 radiation 1.0 720 < th dose dependent rect. 21 19
136 36.78 humidity 90.0 10 < th dose independent rect. 2 20
153 36.80 humidity 80.0 10 > th dose dependent rect. 22 18
167 36.82 radiation 1.0 720 < th dose dependent rect. 19 21
195 36.86 humidity 90.0 10 < th dose independent sin 4 NA
199 36.86 humidity 80.0 10 > th dose dependent rect. 21 23
205 36.88 radiation 1.0 720 > th dose independent rect. 17 22
206 36.89 radiation 1.0 1440 > th dose independent sin 20 NA
218 36.90 radiation 1.0 1440 < th dose independent rect. 13 1
231 36.90 radiation 1.0 1440 < th dose dependent rect. 13 1
236 36.91 humidity 80.0 10 > th dose dependent rect. 7 23
252 36.94 radiation 1.0 1440 < th dose independent sin 20 NA
260 36.95 precipitation 0.1 270 < th dose independent sin 9 NA
265 36.95 precipitation 0.1 270 < th dose dependent sin 9 NA
266 36.95 humidity 80.0 10 > th dose dependent rect. 10 23
269 36.96 humidity 90.0 10 < th dose independent rect. 2 22
271 36.96 humidity 80.0 10 > th dose dependent rect. 7 21
276 36.96 humidity 80.0 10 > th dose dependent rect. 18 23
298 36.99 humidity 80.0 10 > th dose dependent no NA NA
300 36.99 radiation 1.0 1440 < th dose dependent rect. 8 20
304 36.99 humidity 80.0 10 > th dose dependent rect. 15 23
312 37.00 radiation 1.0 1440 < th dose dependent rect. 8 18
320 37.01 radiation 1.0 1440 < th dose dependent rect. 8 16
326 37.02 radiation 1.0 720 < th dose independent rect. 18 22
339 37.03 humidity 80.0 10 > th dose dependent rect. 13 23
348 37.04 humidity 80.0 10 > th dose dependent rect. 22 16
353 37.05 radiation 1.0 720 > th dose independent sin 1 NA
356 37.05 humidity 90.0 10 < th dose independent rect. 16 23
366 37.08 wind 5.0 1440 > th dose independent rect. 14 2
391 37.12 radiation 1.0 1440 < th dose dependent rect. 15 1
403 37.14 radiation 1.0 720 < th dose independent rect. 21 19
422 37.15 radiation 1.0 720 < th dose independent rect. 5 22
451 37.16 radiation 1.0 720 < th dose dependent rect. 5 18
499 37.19 radiation 1.0 720 < th dose dependent rect. 5 21
521 37.22 humidity 90.0 10 > th dose independent rect. 22 14
544 37.23 wind 5.0 1440 < th dose independent rect. 14 2
581 37.25 radiation 1.0 1440 < th dose dependent sin 21 NA
585 37.26 radiation 1.0 720 < th dose independent rect. 5 18
605 37.29 humidity 80.0 10 > th dose dependent rect. 1 23
606 37.30 radiation 1.0 720 > th dose independent rect. 5 14
634 37.32 humidity 90.0 10 < th dose independent rect. 23 23
649 37.33 radiation 1.0 720 > th dose independent no NA NA
744 37.38 radiation 1.0 720 < th dose independent rect. 5 16
777 37.40 humidity 90.0 10 > th dose independent sin 6 NA
779 37.40 humidity 70.0 10 > th dose dependent sin 7 NA
790 37.41 wind 7.0 10 < th dose independent rect. 4 8
796 37.41 radiation 1.0 720 > th dose independent rect. 13 23
799 37.41 radiation 1.0 720 < th dose dependent rect. 5 16
800 37.41 humidity 80.0 10 > th dose dependent rect. 10 18
830 37.45 radiation 1.0 720 < th dose independent no NA NA
847 37.45 radiation 1.0 720 < th dose independent rect. 14 23
868 37.46 radiation 1.0 720 < th dose independent rect. 12 23
876 37.47 humidity 90.0 10 < th dose independent rect. 20 23
884 37.47 radiation 1.0 720 < th dose dependent rect. 14 23
887 37.48 humidity 90.0 10 > th dose independent rect. 20 16
890 37.48 humidity 90.0 10 > th dose independent rect. 20 22
894 37.48 humidity 90.0 10 < th dose independent rect. 13 23
895 37.48 radiation 1.0 720 < th dose dependent no NA NA
914 37.49 radiation 1.0 720 < th dose dependent rect. 1 23
915 37.49 radiation 1.0 720 < th dose dependent rect. 12 23
919 37.50 humidity 90.0 10 < th dose independent no NA NA
933 37.50 humidity 90.0 30 > th dose independent rect. 5 23
934 37.50 radiation 1.0 720 < th dose independent rect. 1 23
970 37.51 temperature 15.0 30 > th dose dependent rect. 4 18