BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0136900 Os03g0136900|AK067183
(986 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0136900 Similar to Aconitate hydratase, cytoplasmic (E... 1828 0.0
Os06g0303400 Similar to Aconitate hydratase, cytoplasmic (E... 1053 0.0
>Os03g0136900 Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
hydro-lyase) (Aconitase)
Length = 986
Score = 1828 bits (4735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 885/896 (98%), Positives = 885/896 (98%)
Query: 91 KNSYDEILTGLAKPGGGAEFGKYYSLPALSDPRIERLPYSIRILLESAIRNCDEFQVTGK 150
KNSYDEILTGLAKPGGGAEFGKYYSLPALSDPRIERLPYSIRILLESAIRNCDEFQVTGK
Sbjct: 91 KNSYDEILTGLAKPGGGAEFGKYYSLPALSDPRIERLPYSIRILLESAIRNCDEFQVTGK 150
Query: 151 DVEKILDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMSKLGSDPNKINPLV 210
DVEKILDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMSKLGSDPNKINPLV
Sbjct: 151 DVEKILDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMSKLGSDPNKINPLV 210
Query: 211 PVDLVIDHSVQVDVARSENAVQANMELEFHRNKERFGFLKWGSTAFRNMLVVPPGSGIVH 270
PVDLVIDHSVQVDVARSENAVQANMELEFHRNKERFGFLKWGSTAFRNMLVVPPGSGIVH
Sbjct: 211 PVDLVIDHSVQVDVARSENAVQANMELEFHRNKERFGFLKWGSTAFRNMLVVPPGSGIVH 270
Query: 271 QVNLEYLARVVFNNGGILYPDSVVGTDSHTTMIDXXXXXXXXXXXIEAEATMLGQPMSMV 330
QVNLEYLARVVFNNGGILYPDSVVGTDSHTTMID IEAEATMLGQPMSMV
Sbjct: 271 QVNLEYLARVVFNNGGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMV 330
Query: 331 LPGVVGFKLTGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGGGMSELSLADRATIAN 390
LPGVVGFKLTGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGGGMSELSLADRATIAN
Sbjct: 331 LPGVVGFKLTGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGGGMSELSLADRATIAN 390
Query: 391 MSPEYGATMGFFPVDGKTLDYLKLTGRSDDTVAMIESYLRANKMFVDYNQPEAERVYSSY 450
MSPEYGATMGFFPVDGKTLDYLKLTGRSDDTVAMIESYLRANKMFVDYNQPEAERVYSSY
Sbjct: 391 MSPEYGATMGFFPVDGKTLDYLKLTGRSDDTVAMIESYLRANKMFVDYNQPEAERVYSSY 450
Query: 451 LELNLEEVEPCLSGPKRPHDRVTLKNMKSDWLSCLDNDVGFKGFAVPKESQGKVAEFSFH 510
LELNLEEVEPCLSGPKRPHDRVTLKNMKSDWLSCLDNDVGFKGFAVPKESQGKVAEFSFH
Sbjct: 451 LELNLEEVEPCLSGPKRPHDRVTLKNMKSDWLSCLDNDVGFKGFAVPKESQGKVAEFSFH 510
Query: 511 GTPAKLKHGDVVIAAITSCTNTSNPNVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV 570
GTPAKLKHGDVVIAAITSCTNTSNPNVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV
Sbjct: 511 GTPAKLKHGDVVIAAITSCTNTSNPNVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV 570
Query: 571 KKYLDKSGLQKYLDQLGFHIVGYGCTTCIGNSGELDETVSAAISDNDIVAAAVLSGNRNF 630
KKYLDKSGLQKYLDQLGFHIVGYGCTTCIGNSGELDETVSAAISDNDIVAAAVLSGNRNF
Sbjct: 571 KKYLDKSGLQKYLDQLGFHIVGYGCTTCIGNSGELDETVSAAISDNDIVAAAVLSGNRNF 630
Query: 631 EGRVHALTRANYLASPPLVVAYALAGTVNIDFEKEPIGISKDGKEVYFRDIWPSTEEIAE 690
EGRVHALTRANYLASPPLVVAYALAGTVNIDFEKEPIGISKDGKEVYFRDIWPSTEEIAE
Sbjct: 631 EGRVHALTRANYLASPPLVVAYALAGTVNIDFEKEPIGISKDGKEVYFRDIWPSTEEIAE 690
Query: 691 VVKSSVLPDMFKSTYEAITKGNPMWNELSVSASTLYPWDPTSTYIHEPPYFKDMTMSPPG 750
VVKSSVLPDMFKSTYEAITKGNPMWNELSVSASTLYPWDPTSTYIHEPPYFKDMTMSPPG
Sbjct: 691 VVKSSVLPDMFKSTYEAITKGNPMWNELSVSASTLYPWDPTSTYIHEPPYFKDMTMSPPG 750
Query: 751 PRPVKDAYCLLNFGDSITTDHISPAGSIHPDSPAARYLKERGVERKDFNSYGSRRGNDEI 810
PRPVKDAYCLLNFGDSITTDHISPAGSIHPDSPAARYLKERGVERKDFNSYGSRRGNDEI
Sbjct: 751 PRPVKDAYCLLNFGDSITTDHISPAGSIHPDSPAARYLKERGVERKDFNSYGSRRGNDEI 810
Query: 811 MARGTFANIRLVNKFLKGEVGPKTIHIPSGEKLSVFDAATKYKNEGHDTIILAGAEYGSG 870
MARGTFANIRLVNKFLKGEVGPKTIHIPSGEKLSVFDAATKYKNEGHDTIILAGAEYGSG
Sbjct: 811 MARGTFANIRLVNKFLKGEVGPKTIHIPSGEKLSVFDAATKYKNEGHDTIILAGAEYGSG 870
Query: 871 SSRDWAAKGPMLQGVKAVIAKSFERIHRSNLAGMGIIPLCFKSGEDADTLGLTGHERFTV 930
SSRDWAAKGPMLQGVKAVIAKSFERIHRSNLAGMGIIPLCFKSGEDADTLGLTGHERFTV
Sbjct: 871 SSRDWAAKGPMLQGVKAVIAKSFERIHRSNLAGMGIIPLCFKSGEDADTLGLTGHERFTV 930
Query: 931 HLPANVSEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYYDNGGILPYVIRKIAEQ 986
HLPANVSEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYYDNGGILPYVIRKIAEQ
Sbjct: 931 HLPANVSEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYYDNGGILPYVIRKIAEQ 986
>Os06g0303400 Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
hydro-lyase) (Aconitase)
Length = 766
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/729 (70%), Positives = 589/729 (80%), Gaps = 24/729 (3%)
Query: 178 QDFTGVPAVVDLACMRDAMSKLGSDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMEL 237
QD TGVPA+VDLA MRD M+KLG DP +INPL+PVD+VIDH+V+VDV RS +A+ NMEL
Sbjct: 33 QDNTGVPAIVDLAAMRDVMAKLGCDPYQINPLIPVDVVIDHAVRVDVVRSHDALDKNMEL 92
Query: 238 EFHRNKERFGFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLARVVFNNGGILYPDSVVGTD 297
EF RNKERFGFLKW STAF M V PPGSGIVHQVNLEYLARVVFN GI+YPDSVVGTD
Sbjct: 93 EFDRNKERFGFLKWASTAFHKMQVFPPGSGIVHQVNLEYLARVVFNADGIMYPDSVVGTD 152
Query: 298 SHTTMIDXXXXXXXXXXXIEAEATMLGQPMSMVLPGVVGFKLTGKLRNGVTATDLVLTVT 357
SHTTMI+ IEA MLGQPM MVLPGVVGFKL+G LR+GVTATDLVLT+T
Sbjct: 153 SHTTMINSLGVAGWGVGGIEAIVAMLGQPMDMVLPGVVGFKLSGMLRDGVTATDLVLTIT 212
Query: 358 QMLRKHGVVGKFVEFYGGGMSELSLADRATIANMSPEYGATMGFFPVDGKTLDYLKLTGR 417
QMLRKHGVVGKFVEFYG G+ ELSL RATIANMSPEYGA+MGFFPVD TLDYLKLTGR
Sbjct: 213 QMLRKHGVVGKFVEFYGVGVGELSLPARATIANMSPEYGASMGFFPVDHVTLDYLKLTGR 272
Query: 418 SDDTVAMIESYLRANKMFVDYNQPEAERVYSSYLELNLEEVEPCLSGPKRPHDRVTLKNM 477
S++TV+MIE+YLRAN MFV++++P ERVYSSYLELNL +VEPC+SGPKRPHDRV LK M
Sbjct: 273 SNETVSMIEAYLRANNMFVEHHEPHTERVYSSYLELNLIDVEPCISGPKRPHDRVPLKEM 332
Query: 478 KSDWLSCLDNDVGFKGFAVPKESQGKVAEFSFHGTPAKLKHGDVVIAAITSCTNTSNPNV 537
KSDW +CLD+ VGFKGFAVP+E Q KV +F F G PA++KHG VV+AAI S TNTSNP+V
Sbjct: 333 KSDWHACLDSRVGFKGFAVPRECQDKVVKFDFQGQPAEIKHGSVVLAAICSSTNTSNPSV 392
Query: 538 MLGAALVAKKACELGLE-------------------VKPWIKTSLAPGSGVVKKYLDKSG 578
++GA LVAKKACELGLE VKPW+KTS GS V ++YL S
Sbjct: 393 IVGAGLVAKKACELGLEGLPFRFRSKNRSSPVYRKQVKPWVKTSFTHGSAVTREYLKHSH 452
Query: 579 LQKYLDQLGFHIVGYGCTTCIGNSGELDETVSAAISDNDIVAAAVLSGNRNFEGRVHALT 638
LQ YL+Q GFH+ +GC TC+GNSG+LDE+VSAAI++NDIV+ AVLS NRNFEGRVH LT
Sbjct: 453 LQDYLNQQGFHLAAFGCATCVGNSGDLDESVSAAITENDIVSVAVLSANRNFEGRVHPLT 512
Query: 639 RANYLASPPLVVAYALAGTVNIDFEKEPIGISKDGKEVYFRDIWPSTEEIAEVVKSSVLP 698
RANYLASPPLVVAYALAGTV+IDFEKEPIG KDG EVY RDIWP+ EEI +VVKSSVLP
Sbjct: 513 RANYLASPPLVVAYALAGTVDIDFEKEPIGHGKDGNEVYLRDIWPTNEEIEQVVKSSVLP 572
Query: 699 DMFKSTYEAITKGNPMWNELSV--SASTLYPWDPTSTYIHEPPYFKDMTMSPPG-PRPVK 755
MF TYE+I + N WNEL V A+ LYPWDP+STYI +PPY + M MSPP PR V+
Sbjct: 573 HMFTQTYESIKRCNRRWNELRVPGEAAALYPWDPSSTYIRKPPYLEGMAMSPPSRPRSVR 632
Query: 756 DAYCLLNFGDSITTDHISPAGSIHPDSPAARYLKERGV-ERKDFNSYGSRRGNDEIMARG 814
DAYCLLN GDS+TTDHIS +GSI P S AA YL+ GV +R+ SYG RRGNDE++ RG
Sbjct: 633 DAYCLLNLGDSVTTDHISYSGSITPGSAAAEYLRAAGVADRERLGSYGGRRGNDEVVVRG 692
Query: 815 TFANIRLVNKFLKGEVGPKTIHIPSGEKLSVFDAATKYKNEGHD-TIILAGAEYGSGSSR 873
FAN R+VNK + G+VGPKT+H+P+GE+L VFDAA KYK+EGH+ I++AGAEYGSGSSR
Sbjct: 693 AFANARIVNKLMNGKVGPKTVHVPTGEELCVFDAAIKYKSEGHNMVIVIAGAEYGSGSSR 752
Query: 874 DWAAKGPML 882
D AAKGPML
Sbjct: 753 DSAAKGPML 761
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,159,934
Number of extensions: 1428370
Number of successful extensions: 3229
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3223
Number of HSP's successfully gapped: 2
Length of query: 986
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 875
Effective length of database: 11,240,047
Effective search space: 9835041125
Effective search space used: 9835041125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)