Os02g0125100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cis-homoaconitase family protein.
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Os02g0125100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cis-homoaconitase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.44 | 0.144 | 14 | -0.434 | 0.281 | -0.113 | 0.206 | -1.08 | -0.326 | 19 | -0.001612 | 5008 | -- | -- |
| 9.85 | 0.146 | 14 | -0.434 | 0.278 | -0.382 | 0.237 | -- | -0.321 | 19.1 | 0.1325 | 2214 | -- | -- |
| 9.54 | 0.144 | 14 | -0.435 | 0.283 | -0.115 | -- | -1.07 | -0.327 | 18.9 | -0.03967 | 5009 | -- | -- |
| 9.97 | 0.147 | 14 | -0.428 | 0.287 | -0.396 | -- | -- | -0.332 | 18.9 | 0.2644 | 2219 | -- | -- |
| 13.63 | 0.172 | 14 | -0.44 | -- | -0.126 | -- | -1.12 | -0.33 | -- | -0.1128 | 5480 | -- | -- |
| 12.16 | 0.163 | 14 | -0.535 | 0.283 | -- | 0.225 | -- | -0.308 | 18.8 | -- | -- | -- | -- |
| 12.29 | 0.164 | 14 | -0.539 | 0.284 | -- | -- | -- | -0.307 | 18.7 | -- | -- | -- | -- |
| 14.13 | 0.175 | 14 | -0.448 | -- | -0.314 | -- | -- | -0.35 | -- | 0.452 | 16710 | -- | -- |
| 12.54 | 0.165 | 14 | -- | 0.338 | -0.467 | -- | -- | -0.321 | 18.7 | 0.5067 | 27299 | -- | -- |
| 16.51 | 0.19 | 14 | -0.545 | -- | -- | -- | -- | -0.313 | -- | -- | -- | -- | -- |
| 19.93 | 0.209 | 14 | -- | 0.291 | -- | -- | -- | -0.247 | 18.6 | -- | -- | -- | -- |
| 16.77 | 0.191 | 14 | -- | -- | -0.49 | -- | -- | -0.342 | -- | 0.8202 | 27296 | -- | -- |
| 24.35 | 0.23 | 14 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.92 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 2 | 8.92 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 3 | 8.92 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 5 | 8.95 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 11 |
| 6 | 8.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 7 | 8.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 11 |
| 8 | 8.96 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 11 |
| 9 | 8.96 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 11 |
| 10 | 8.97 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 10 | 7 |
| 11 | 8.97 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 14 | 8.97 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 20 | 8.98 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 10 | 7 |
| 22 | 8.99 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 24 | 8.99 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 9 |
| 27 | 9.00 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 10 | 7 |
| 30 | 9.00 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 10 | 7 |
| 39 | 9.04 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 1 | NA |
| 48 | 9.05 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 1 | NA |
| 49 | 9.05 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 51 | 9.05 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 1 | NA |
| 58 | 9.07 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 121 | 9.18 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 2 | NA |
| 133 | 9.19 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 175 | 9.23 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 177 | 9.23 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 8 |
| 191 | 9.24 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 7 |
| 201 | 9.24 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 7 |
| 256 | 9.28 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 261 | 9.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 272 | 9.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 279 | 9.30 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 280 | 9.30 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 303 | 9.31 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 323 | 9.32 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 344 | 9.34 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 360 | 9.35 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 365 | 9.35 | humidity | 60.0 | 720 | > th | dose dependent | sin | 1 | NA |
| 367 | 9.35 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 368 | 9.35 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 398 | 9.37 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 399 | 9.37 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 400 | 9.37 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 404 | 9.37 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 6 |
| 431 | 9.39 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 432 | 9.39 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 433 | 9.39 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 459 | 9.40 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 464 | 9.40 | humidity | 80.0 | 720 | < th | dose independent | rect. | 7 | 7 |
| 491 | 9.41 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 504 | 9.41 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 506 | 9.41 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 530 | 9.42 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 569 | 9.43 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 583 | 9.43 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 19 |
| 604 | 9.44 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 638 | 9.45 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 644 | 9.45 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 6 | 9 |
| 676 | 9.46 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 692 | 9.47 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 693 | 9.47 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 696 | 9.47 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 699 | 9.47 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 726 | 9.47 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 5 | 9 |
| 753 | 9.48 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 800 | 9.49 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 5 | 14 |
| 808 | 9.50 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 814 | 9.50 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 815 | 9.50 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 849 | 9.50 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 850 | 9.50 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 898 | 9.51 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 962 | 9.52 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 971 | 9.52 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 978 | 9.52 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 9 | 10 |
| 990 | 9.53 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |