BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0125100 Os02g0125100|AK101889
(514 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G13430.1 | chr4:7804194-7807789 REVERSE LENGTH=510 827 0.0
AT4G35830.1 | chr4:16973007-16977949 REVERSE LENGTH=899 81 1e-15
AT4G26970.1 | chr4:13543077-13548427 FORWARD LENGTH=996 80 2e-15
AT2G05710.1 | chr2:2141591-2146350 FORWARD LENGTH=991 78 1e-14
>AT4G13430.1 | chr4:7804194-7807789 REVERSE LENGTH=510
Length = 509
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/448 (84%), Positives = 418/448 (93%)
Query: 66 GSVKSAMTMTEKILARASERASLEPGENVWVDVDVLMTHDVCGPGTIGIFKREFGEDAKV 125
GSVK+ MTMTEKILARASE++ + PG+N+WV+VDVLMTHDVCGPG GIFKREFGE AKV
Sbjct: 61 GSVKTGMTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKV 120
Query: 126 WDREKVVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLSNFKANPDYKGVCH 185
WD EK+V+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DL NFKANPDYKGVCH
Sbjct: 121 WDPEKIVVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCH 180
Query: 186 VALAQEGHCRPGEVLLGTDSHTCNAGAFGQFATGIGNTDAGFVMGTGKALLKVPPTIRFV 245
VALAQEGHCRPGEVLLGTDSHTC AGAFGQFATGIGNTDAGFV+GTGK LLKVPPT+RF+
Sbjct: 181 VALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFI 240
Query: 246 LDGEMPPYLLAKDLILQIIGEISVSGATYKSMEFVGSTVESLNMEERMTLCNMVIEAGGK 305
LDGEMP YL AKDLILQIIGEISV+GATYK+MEF G+T+ESL+MEERMTLCNMV+EAGGK
Sbjct: 241 LDGEMPSYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGK 300
Query: 306 NGVVPADQTTFNYLEGKTSVEYEPVYSDAQARFVSDYRFDVSKLEPVIAKPHSPDNRALA 365
NGV+P D TT NY+E +TSV +EPVYSD A FV+DYRFDVSKLEPV+AKPHSPDNRALA
Sbjct: 301 NGVIPPDATTLNYVENRTSVPFEPVYSDGNASFVADYRFDVSKLEPVVAKPHSPDNRALA 360
Query: 366 RECKDVKIDRVYIGSCTGGKTEDFFAAAKVFLASGKKVKVPTFLVPATQKVWMDIYSIPV 425
RECKDVKIDRVYIGSCTGGKTEDF AAAK+F A+G+KVKVPTFLVPATQKVWMD+Y++PV
Sbjct: 361 RECKDVKIDRVYIGSCTGGKTEDFMAAAKLFHAAGRKVKVPTFLVPATQKVWMDVYALPV 420
Query: 426 PGAGGKTCSQIFEEAGCDTPASPSCGACLGGPRDTYARMNEPMVCVSTTNRNFPGRMGHK 485
PGAGGKTC+QIFEEAGCDTPASPSCGACLGGP DTYAR+NEP VCVSTTNRNFPGRMGHK
Sbjct: 421 PGAGGKTCAQIFEEAGCDTPASPSCGACLGGPADTYARLNEPQVCVSTTNRNFPGRMGHK 480
Query: 486 EGQIYLASPFTAAASALTGYVTDPRDFL 513
EGQIYLASP+TAAASALTG V DPR+FL
Sbjct: 481 EGQIYLASPYTAAASALTGRVADPREFL 508
>AT4G35830.1 | chr4:16973007-16977949 REVERSE LENGTH=899
Length = 898
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 111/465 (23%), Positives = 172/465 (36%), Gaps = 85/465 (18%)
Query: 120 GEDAKVWDREKVVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLSNFKAN-- 177
G+ K+ V ++ DH + R+ V + ++N + F +K SN N
Sbjct: 113 GDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSNAFHNML 172
Query: 178 --PDYKGVCH---------VALAQEGHCRPGEVLLGTDSHTCNAGAFGQFATGIGNTDAG 226
P G+ H V G P V+ GTDSHT G G+G +A
Sbjct: 173 VVPPGSGIVHQVNLEYLARVVFNTNGLLYPDSVV-GTDSHTTMIDGLGVAGWGVGGIEAE 231
Query: 227 FVMGTGKALLKVPPTIRFVLDGEMPPYLLAKDLILQIIGEISVSGATYKSMEFVGSTVES 286
M + +P + F L G++ + A DL+L + + G K +EF G +
Sbjct: 232 ATMLGQPMSMVLPGVVGFKLTGKLRDGMTATDLVLTVTQMLRKHGVVGKFVEFHGEGMRE 291
Query: 287 LNMEERMTLCNMVIEAGGKNGVVPADQTTFNYLE--GKT--SVEYEPVYSDAQARFVSDY 342
L++ +R T+ NM E G G P D T YL G++ +V Y A FV DY
Sbjct: 292 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLRLTGRSDDTVSMIEAYLRANKMFV-DY 350
Query: 343 -------------RFDVSKLEPVIAKPHSP-----------------DNR------ALAR 366
++ +EP ++ P P DNR A+ +
Sbjct: 351 SEPESKTVYSSCLELNLEDVEPCVSGPKRPHDRVPLKEMKADWHSCLDNRVGFKGFAVPK 410
Query: 367 ECKDVKIDRVYIGSCTGGKTEDFFAAAKVFLASGKKVKVPTFLVPATQ------------ 414
E + ++ + G+ + D AA + S P+ ++ A
Sbjct: 411 EAQSKAVEFNFNGTTAQLRHGDVVIAA---ITSCTNTSNPSVMLGAALVAKKACDLGLEV 467
Query: 415 KVWMDIYSIPVPGAG------GKTCSQIFEEAGCDTPASPSCGACLGGPRDTYARMNEPM 468
K W I + PG+G K+ Q + + C C+G D + + +
Sbjct: 468 KPW--IKTSLAPGSGVVTKYLAKSGLQKYLNQLGFSIVGYGCTTCIGNSGDIHEAVASAI 525
Query: 469 V-------CVSTTNRNFPGRMGHKEGQIYLASPFTAAASALTGYV 506
V V + NRNF GR+ YLASP A AL G V
Sbjct: 526 VDNDLVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 570
>AT4G26970.1 | chr4:13543077-13548427 FORWARD LENGTH=996
Length = 995
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 112/460 (24%), Positives = 167/460 (36%), Gaps = 97/460 (21%)
Query: 131 VVIIPDHYIFT----SDERANRNVDILRDFCMEQNIKYFYDIKDLSNFKANPDYKGVCH- 185
V ++ DH I S++ A +N+++ E+ + N P G+ H
Sbjct: 221 VDLVVDHSIQVDFARSEDAAQKNLELEFKRNKERFTFLKWGSTAFQNMLVVPPGSGIVHQ 280
Query: 186 --------VALAQEGHCRPGEVLLGTDSHTCNAGAFGQFATGIGNTDAGFVMGTGKALLK 237
V +G P V+ GTDSHT G G+G +A M +
Sbjct: 281 VNLEYLGRVVFNSKGFLYPDSVV-GTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 339
Query: 238 VPPTIRFVLDGEMPPYLLAKDLILQIIGEISVSGATYKSMEFVGSTVESLNMEERMTLCN 297
+P + F LDG++ + A DL+L + + G K +EF G + L++ +R T+ N
Sbjct: 340 LPGVVGFKLDGKLKEGVTATDLVLTVTQILRKHGVVGKFVEFYGEGMSELSLADRATIAN 399
Query: 298 MVIEAGGKNGVVPADQTTFNYLE--GKT--SVEYEPVYSDAQARFVSDY----------- 342
M E G G P D T YL+ G++ +V Y A FV DY
Sbjct: 400 MSPEYGATMGFFPVDHVTLEYLKLTGRSDETVSMIESYLRANNMFV-DYNEPQQERAYTS 458
Query: 343 --RFDVSKLEPVIAKPHSPDNRALARECK------------------------------- 369
+ D+ +EP I+ P P +R ++ K
Sbjct: 459 YLQLDLGHVEPCISGPKRPHDRVPLKDMKADWHACLDNPVGFKGFAVPKEKQEEVVKFSY 518
Query: 370 -----DVKIDRVYIG---SCTGGKTEDFFAAAKVFLAS----GKKVK--VPTFLVPATQK 415
++K V I SCT A + G KVK V T L P ++
Sbjct: 519 NGQPAEIKHGSVVIAAITSCTNTSNPSVMIGAALVAKKASDLGLKVKPWVKTSLAPGSRV 578
Query: 416 V--WMDIYSIPVPGAGGKTCSQIFEEAGCDTPASPSCGACLGGPRDTYARMNEPM----- 468
V ++D G Q FE G C C+G + + +
Sbjct: 579 VEKYLD-----RSGLRESLTKQGFEIVGY------GCTTCIGNSGNLDPEVASAIEGTDI 627
Query: 469 --VCVSTTNRNFPGRMGHKEGQIYLASPFTAAASALTGYV 506
V + NRNF GR+ + YLASP A AL G V
Sbjct: 628 IPAAVLSGNRNFEGRVHPQTRANYLASPPLVVAYALAGTV 667
>AT2G05710.1 | chr2:2141591-2146350 FORWARD LENGTH=991
Length = 990
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 112/463 (24%), Positives = 166/463 (35%), Gaps = 103/463 (22%)
Query: 131 VVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIK----DLSNFKANPDYKGVCH- 185
V ++ DH + R+ V + ++N + F +K N P G+ H
Sbjct: 216 VDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQ 275
Query: 186 --------VALAQEGHCRPGEVLLGTDSHTCNAGAFGQFATGIGNTDAGFVMGTGKALLK 237
V +G P V+ GTDSHT G G+G +A M +
Sbjct: 276 VNLEYLGRVVFNTKGLLYPDSVV-GTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMV 334
Query: 238 VPPTIRFVLDGEMPPYLLAKDLILQIIGEISVSGATYKSMEFVGSTVESLNMEERMTLCN 297
+P + F L G+M + A DL+L + + G K +EF G+ + L++ +R T+ N
Sbjct: 335 LPGVVGFKLAGKMRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGNGMSGLSLADRATIAN 394
Query: 298 MVIEAGGKNGVVPADQTTFNYLE--GKT--SVEYEPVYSDAQARFVSDY----------- 342
M E G G P D T YL+ G++ +V Y A FV DY
Sbjct: 395 MSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANNMFV-DYNEPQQDRVYSS 453
Query: 343 --RFDVSKLEPVIAKPHSPDNRALARE-------CKDVKI------------DRVY---- 377
++ +EP I+ P P +R +E C D K+ ++V
Sbjct: 454 YLELNLDDVEPCISGPKRPHDRVTLKEMKADWHSCLDSKVGFKGFAIPKEAQEKVVNFSF 513
Query: 378 ----------------IGSCTGGKTEDFFAAA------------------KVFLASGKKV 403
I SCT A K LA G V
Sbjct: 514 DGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACDLGLQVKPWIKTSLAPGSGV 573
Query: 404 KVPTFLVPATQKVWMDIYSIPVPGAGGKTCSQIFEEAGCDTPASPSCGACLGGPRDTYAR 463
V +L+ + + +++ + G G TC G + S GA + D A
Sbjct: 574 -VTKYLLKSGLQEYLNEQGFNIVGYGCTTC------IGNSGEINESVGAAI-TENDIVA- 624
Query: 464 MNEPMVCVSTTNRNFPGRMGHKEGQIYLASPFTAAASALTGYV 506
V + NRNF GR+ YLASP A AL G V
Sbjct: 625 -----AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 662
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,621,182
Number of extensions: 464908
Number of successful extensions: 874
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 874
Number of HSP's successfully gapped: 4
Length of query: 514
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 411
Effective length of database: 8,282,721
Effective search space: 3404198331
Effective search space used: 3404198331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)