Os09g0449600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase).
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Os09g0449600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.84 | 0.556 | 9.15 | -0.228 | 1.25 | 0.787 | -0.539 | 0.955 | 0.374 | 20.6 | 21.21 | 663 | -- | -- |
| 142.32 | 0.556 | 9.18 | -0.394 | 1.27 | 0.716 | -0.139 | -- | 0.351 | 20.5 | 21.2 | 607 | -- | -- |
| 140.58 | 0.552 | 9.16 | -0.27 | 1.25 | 0.771 | -- | 0.715 | 0.36 | 20.6 | 21.2 | 615 | -- | -- |
| 142.25 | 0.555 | 9.18 | -0.447 | 1.26 | 0.728 | -- | -- | 0.324 | 20.6 | 21.2 | 612 | -- | -- |
| 224.54 | 0.698 | 9.14 | -0.377 | -- | 1.1 | -- | 0.792 | 0.264 | -- | 21.4 | 672 | -- | -- |
| 161.24 | 0.595 | 9.14 | -0.195 | 1.39 | -- | -0.195 | -- | 0.519 | 20.6 | -- | -- | -- | -- |
| 161.36 | 0.595 | 9.14 | -0.188 | 1.39 | -- | -- | -- | 0.519 | 20.6 | -- | -- | -- | -- |
| 226.98 | 0.702 | 9.17 | -0.572 | -- | 1.07 | -- | -- | 0.214 | -- | 21.4 | 669 | -- | -- |
| 147.04 | 0.565 | 9.17 | -- | 1.29 | 0.614 | -- | -- | 0.385 | 20.5 | 21.34 | 600 | -- | -- |
| 270.59 | 0.769 | 9.1 | -0.193 | -- | -- | -- | -- | 0.506 | -- | -- | -- | -- | -- |
| 162.3 | 0.596 | 9.13 | -- | 1.4 | -- | -- | -- | 0.54 | 20.5 | -- | -- | -- | -- |
| 234.94 | 0.714 | 9.15 | -- | -- | 0.938 | -- | -- | 0.307 | -- | 21.4 | 655 | -- | -- |
| 271.58 | 0.769 | 9.1 | -- | -- | -- | -- | -- | 0.528 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.44 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 6 | 134.48 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 8 | 134.49 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 13 | 134.95 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 5 |
| 14 | 135.12 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 23 | 135.52 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 44 | 135.99 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 62 | 136.30 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 2 | 11 |
| 83 | 136.66 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 97 | 136.79 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 103 | 136.86 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 10 |
| 130 | 137.25 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 13 |
| 132 | 137.26 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 150 | 137.48 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 165 | 137.68 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 11 |
| 171 | 137.73 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 189 | 137.87 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 190 | 137.88 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 195 | 137.96 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 9 |
| 201 | 137.97 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 219 | 138.05 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 239 | 138.18 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 264 | 138.40 | humidity | 70.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 279 | 138.50 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 5 |
| 330 | 138.83 | temperature | 20.0 | 720 | > th | dose independent | sin | 9 | NA |
| 367 | 138.98 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 2 |
| 381 | 139.05 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 398 | 139.15 | temperature | 20.0 | 720 | < th | dose independent | sin | 9 | NA |
| 438 | 139.34 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 440 | 139.35 | humidity | 70.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 486 | 139.53 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 5 | 5 |
| 513 | 139.72 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 21 |
| 559 | 139.94 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 560 | 139.95 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 566 | 139.97 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 626 | 140.18 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 15 |
| 691 | 140.48 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 783 | 140.81 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 807 | 140.93 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 814 | 140.96 | radiation | 1.0 | 30 | > th | dose independent | sin | 2 | NA |
| 832 | 141.00 | radiation | 1.0 | 30 | < th | dose independent | sin | 2 | NA |
| 835 | 141.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 878 | 141.22 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 899 | 141.28 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 911 | 141.33 | wind | 1.0 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 919 | 141.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 922 | 141.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 935 | 141.38 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 19 |
| 944 | 141.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 947 | 141.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 966 | 141.48 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 973 | 141.50 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 976 | 141.52 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |