BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0225800 Os06g0225800|AB188835
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0225800 Shikimate kinase domain containing protein 520 e-148
Os04g0640600 Shikimate kinase domain containing protein 344 5e-95
Os02g0749300 Similar to Shikimate kinase, chloroplast precu... 248 6e-66
Os01g0102600 Shikimate kinase domain containing protein 97 1e-20
>Os06g0225800 Shikimate kinase domain containing protein
Length = 307
Score = 520 bits (1338), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/307 (85%), Positives = 264/307 (85%)
Query: 1 MEARAGLAMQSXXXXXXXXXXXXXXXXXXXXXXXKRPTAASLRVXXXXXXXXXXXXXXXX 60
MEARAGLAMQS KRPTAASLRV
Sbjct: 1 MEARAGLAMQSRAAVGVGAGPGVGRRGRAVIRVGKRPTAASLRVGGPAGPAAAKPLAPLY 60
Query: 61 XXXXSRGHDSLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGY 120
SRGHDSLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGY
Sbjct: 61 CLKASRGHDSLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGY 120
Query: 121 SFFDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPV 180
SFFDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPV
Sbjct: 121 SFFDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPV 180
Query: 181 NWKYMKKGLSVWLDVPLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDA 240
NWKYMKKGLSVWLDVPLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDA
Sbjct: 181 NWKYMKKGLSVWLDVPLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDA 240
Query: 241 YANADARVSLEEIAAKQGHDDVSKLTPTDIAIEALLKIENFVTEHSTSSGPVGDLIVDSQ 300
YANADARVSLEEIAAKQGHDDVSKLTPTDIAIEALLKIENFVTEHSTSSGPVGDLIVDSQ
Sbjct: 241 YANADARVSLEEIAAKQGHDDVSKLTPTDIAIEALLKIENFVTEHSTSSGPVGDLIVDSQ 300
Query: 301 NRRTKAL 307
NRRTKAL
Sbjct: 301 NRRTKAL 307
>Os04g0640600 Shikimate kinase domain containing protein
Length = 287
Score = 344 bits (882), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 166/220 (75%), Positives = 191/220 (86%)
Query: 67 GHDSLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSD 126
G D + S DEAL+LK+K+E+V+ YLN RCIYLVGMMGSGK+TV KILAEVLGYSFFDSD
Sbjct: 64 GIDKTYYSADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSD 123
Query: 127 KLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNWKYMK 186
KLVE+AVG+ SVA+IF+ HSEAFFRDNES VLRDLSSM RLVVATGGGAVIRP+NW YMK
Sbjct: 124 KLVEKAVGISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMK 183
Query: 187 KGLSVWLDVPLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDAYANADA 246
KG ++WLDVPLDALARRIA VGTASRPLL Q S DPY A++KL+ L EQR D+YANADA
Sbjct: 184 KGSTIWLDVPLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYANADA 243
Query: 247 RVSLEEIAAKQGHDDVSKLTPTDIAIEALLKIENFVTEHS 286
RVSLE IA KQGH +V+ LTP+ IAIEALLK+E+F+TE +
Sbjct: 244 RVSLEHIAVKQGHSNVTTLTPSAIAIEALLKMESFLTEKA 283
>Os02g0749300 Similar to Shikimate kinase, chloroplast precursor (EC 2.7.1.71)
Length = 195
Score = 248 bits (632), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 117/125 (93%), Positives = 122/125 (97%)
Query: 65 SRGHDSLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFD 124
S GH++LHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTV KI++EVLGYSFFD
Sbjct: 67 SGGHETLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFD 126
Query: 125 SDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNWKY 184
SDKLVEQAVGMPSVAQIFK HSEAFFRDNESSVLRDLSSM+RLVVATGGGAVIRPVNWKY
Sbjct: 127 SDKLVEQAVGMPSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGGGAVIRPVNWKY 186
Query: 185 MKKGL 189
MKKGL
Sbjct: 187 MKKGL 191
>Os01g0102600 Shikimate kinase domain containing protein
Length = 269
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 7/206 (3%)
Query: 81 LKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGMPSVAQ 140
L RK+ E + IY+VG + K +AK+LA + Y + S++L+E +G
Sbjct: 62 LLRKTAEAVGDFRKTPIYIVGTDCTAKRNIAKLLANSIIYRYLCSEELLEDVLGGKDALN 121
Query: 141 IFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNWKYMKKGLSVWLDVPLDAL 200
F+E + + E+ L+ L+SM LV+ G GAV+ N ++ G+S+W+D+PL+ +
Sbjct: 122 AFRESDLNGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLRHGVSIWIDIPLELV 181
Query: 201 ARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDAYANADARVSLEEIAAKQGHD 260
+ + S P D ++ A S++ ++ + Y +D VS++ +A++ G+
Sbjct: 182 VNDMLKTQATSDP-------DSFSEAMSRVRQRHDELKERYGVSDITVSVQNVASQLGYS 234
Query: 261 DVSKLTPTDIAIEALLKIENFVTEHS 286
+ +T D+ +E + +IE + S
Sbjct: 235 SIDSVTLEDMVLEIVRQIERLIRAKS 260
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,309,145
Number of extensions: 310759
Number of successful extensions: 1138
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 4
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)