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Os02g0749300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Shikimate kinase, chloroplast precursor (EC 2.7.1.71).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0303) R2 : 0.725
β1 : -2.68 (0.111) R2dD : 0.372 R2D : 0.366
β2 : 0.752 (0.0814) R2dC : 0.0611 R2C : 0.141
β3 : -2.15 (0.138) R2dE : 0.177 R2E : 0.295
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.415 (0.0645) R2dN8 : 0.0359 R2N8 : -0.008
σ : 0.565
deviance : 147.25
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_____
C
peak time of C : 9.49
E
wheather : temperature
threshold : 21.63
memory length : 107
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 4.52

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.07 0.552 11.6 -2.47 0.678 -2.53 1.44 4.45 -0.374 10.2 21.75 108 15.9 4.75
142.42 0.556 11.6 -2.71 0.701 -2.09 1.4 -- -0.391 10.1 20.74 94 16 4.75
144.95 0.561 11.6 -2.44 0.73 -2.54 -- 4.88 -0.398 9.63 22.62 107 16 4.6
147.25 0.565 11.6 -2.68 0.752 -2.15 -- -- -0.415 9.49 21.63 107 16 4.52
166.31 0.601 11.6 -2.19 -- -3.03 -- 6.22 -0.262 -- 22.86 166 15.6 6.13
206.41 0.674 11.6 -2.89 1.4 -- 1.32 -- -0.476 8.26 -- -- -- --
211.57 0.681 11.6 -2.85 1.41 -- -- -- -0.478 8.08 -- -- -- --
165.67 0.599 11.6 -2.52 -- -2.4 -- -- -0.305 -- 19.86 145 15.8 7.42
337.69 0.856 11.5 -- 0.739 -2.39 -- -- -0.14 9.48 22.78 151 15.8 4.6
320.26 0.836 11.6 -2.84 -- -- -- -- -0.461 -- -- -- -- --
426.15 0.966 11.5 -- 1.39 -- -- -- -0.161 8.23 -- -- -- --
341.43 0.861 11.5 -- -- -2.46 -- -- -0.0555 -- 18 173 15.1 9.63
533.13 1.08 11.6 -- -- -- -- -- -0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.87 temperature 20.0 90 > th dose dependent rect. 16 5
2 141.23 temperature 25.0 270 > th dose dependent rect. 15 3
8 142.65 temperature 25.0 270 > th dose dependent rect. 16 1
14 144.20 temperature 25.0 90 > th dose dependent rect. 16 9
18 144.34 temperature 25.0 90 > th dose dependent rect. 16 11
24 144.74 temperature 25.0 90 > th dose dependent rect. 16 16
32 145.02 temperature 25.0 270 > th dose dependent rect. 14 19
36 145.73 radiation 1.0 270 > th dose dependent rect. 16 2
48 145.90 temperature 25.0 90 > th dose independent rect. 16 3
69 147.34 radiation 1.0 270 > th dose independent rect. 15 4
85 147.56 temperature 25.0 10 > th dose independent rect. 16 5
117 149.02 humidity 90.0 90 < th dose dependent rect. 16 5
134 149.42 humidity 90.0 270 < th dose dependent rect. 16 1
139 149.68 temperature 25.0 10 > th dose dependent rect. 16 9
178 150.77 radiation 1.0 270 < th dose independent sin 13 NA
187 151.06 temperature 25.0 90 > th dose dependent sin 12 NA
192 151.47 temperature 25.0 270 > th dose independent rect. 16 1
195 151.50 radiation 1.0 270 > th dose independent sin 14 NA
197 151.60 humidity 50.0 270 > th dose independent rect. 17 23
202 151.72 radiation 1.0 270 < th dose dependent rect. 3 23
219 151.85 radiation 30.0 14400 < th dose independent rect. 17 3
221 151.90 humidity 90.0 90 < th dose independent rect. 16 3
233 152.54 humidity 80.0 270 < th dose dependent rect. 15 18
235 152.68 temperature 25.0 270 > th dose independent rect. 14 5
243 152.88 radiation 1.0 270 < th dose dependent sin 14 NA
273 153.83 humidity 90.0 90 < th dose dependent rect. 16 9
307 154.38 wind 3.0 90 > th dose independent rect. 16 3
318 154.58 radiation 1.0 270 > th dose independent rect. 13 22
333 154.61 humidity 90.0 90 < th dose dependent rect. 16 13
354 154.74 precipitation 0.1 90 < th dose independent rect. 16 3
355 154.74 precipitation 0.1 90 < th dose dependent rect. 16 3
366 155.05 humidity 50.0 270 > th dose independent sin 11 NA
375 155.18 humidity 90.0 30 < th dose independent rect. 16 5
382 155.35 wind 7.0 90 < th dose independent rect. 16 3
386 155.46 atmosphere 995.0 90 > th dose independent rect. 16 3
392 155.52 temperature 10.0 1440 > th dose independent rect. 17 3
395 155.52 radiation 30.0 1440 < th dose independent rect. 17 3
401 155.52 temperature 10.0 1440 > th dose independent rect. 20 21
405 155.56 humidity 50.0 90 > th dose independent rect. 19 21
440 155.95 wind 9.0 90 < th dose independent rect. 19 21
458 156.31 radiation 30.0 90 < th dose independent rect. 16 3
460 156.32 temperature 10.0 90 > th dose independent rect. 16 3
462 156.32 atmosphere 1010.0 90 < th dose independent rect. 16 3
465 156.32 temperature 10.0 90 > th dose independent rect. 19 21
474 156.51 radiation 1.0 270 < th dose independent rect. 4 23
478 156.54 temperature 25.0 270 > th dose dependent sin 15 NA
496 156.77 humidity 50.0 270 > th dose independent sin 16 NA
516 157.30 wind 3.0 30 > th dose independent rect. 16 5
523 157.47 humidity 50.0 270 > th dose independent sin 4 NA
526 157.51 wind 9.0 90 < th dose dependent rect. 16 3
539 157.76 radiation 1.0 270 > th dose independent rect. 14 19
615 158.56 wind 3.0 270 > th dose independent rect. 14 5
621 158.59 wind 3.0 270 > th dose independent rect. 16 1
640 158.91 humidity 80.0 90 < th dose dependent sin 11 NA
664 159.14 temperature 10.0 270 > th dose dependent rect. 14 11
671 159.28 humidity 60.0 270 < th dose dependent rect. 16 18
681 159.41 radiation 1.0 270 < th dose dependent rect. 16 22
686 159.44 humidity 70.0 270 < th dose independent rect. 15 18
689 159.49 humidity 50.0 270 < th dose dependent sin 4 NA
716 159.78 humidity 50.0 10 > th dose independent rect. 21 19
719 159.79 humidity 50.0 270 < th dose independent sin 6 NA
723 159.82 atmosphere 995.0 90 > th dose independent rect. 19 21
733 159.91 humidity 50.0 270 < th dose dependent sin 9 NA
757 160.01 humidity 50.0 270 < th dose independent rect. 16 19
792 160.20 humidity 50.0 270 < th dose dependent rect. 17 23
798 160.26 precipitation 0.1 30 < th dose independent rect. 16 5
799 160.26 precipitation 0.1 30 < th dose dependent rect. 16 5
803 160.29 humidity 50.0 270 < th dose independent sin 9 NA
811 160.32 radiation 1.0 270 < th dose dependent rect. 15 18
824 160.43 radiation 1.0 270 < th dose dependent rect. 15 15
829 160.47 precipitation 0.1 90 < th dose independent rect. 19 21
831 160.47 precipitation 0.1 90 < th dose dependent rect. 19 21
832 160.49 humidity 80.0 270 < th dose independent rect. 14 5
836 160.52 radiation 1.0 270 < th dose dependent rect. 10 23
854 160.66 atmosphere 995.0 90 > th dose dependent rect. 16 3
857 160.67 humidity 50.0 270 < th dose dependent rect. 9 8
907 160.80 temperature 30.0 90 < th dose independent sin 12 NA
924 160.89 humidity 50.0 270 < th dose dependent no NA NA