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Os06g0225800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Shikimate kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.44 (0.038) R2 : 0.591
β1 : -2.94 (0.141) R2dD : 0.416 R2D : 0.226
β2 : 1.1 (0.0984) R2dC : 0.113 R2C : 0.0645
β3 : 1.25 (0.113) R2dE : 0.113 R2E : 0.012
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.911 (0.0811) R2dN8 : 0.152 R2N8 : 0.0339
σ : 0.71
deviance : 232.46
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C
peak time of C : 7.09
E
wheather : humidity
threshold : 68.99
memory length : 1228
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.47 0.716 8.44 -2.94 1.1 1.25 0.047 -0.0387 -0.913 7.07 69 1233 -- --
232.46 0.71 8.44 -2.94 1.1 1.24 0.0476 -- -0.911 7.09 68.92 1228 -- --
232.46 0.71 8.44 -2.94 1.1 1.25 -- -0.0362 -0.912 7.09 69 1228 -- --
232.46 0.71 8.44 -2.94 1.1 1.25 -- -- -0.911 7.09 68.99 1228 -- --
293.73 0.798 8.46 -2.94 -- 1.25 -- -0.146 -0.899 -- 69 1289 -- --
289.16 0.797 8.44 -2.68 1.13 -- 0.279 -- -0.907 6.05 -- -- -- --
289.34 0.797 8.44 -2.68 1.13 -- -- -- -0.908 6.09 -- -- -- --
293.78 0.798 8.46 -2.92 -- 1.24 -- -- -0.894 -- 68.96 1289 -- --
449.59 0.988 8.39 -- 1.03 1.03 -- -- -0.683 6.59 65.12 8486 -- --
355.5 0.881 8.46 -2.65 -- -- -- -- -0.883 -- -- -- -- --
478.35 1.02 8.37 -- 1.09 -- -- -- -0.61 6.21 -- -- -- --
370.93 0.897 8.36 -- -- 2.5 -- -- -0.445 -- 63.95 47520 -- --
540.14 1.08 8.39 -- -- -- -- -- -0.589 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.86 atmosphere 995 43200 < th dose dependent rect. 12 18
2 232.86 atmosphere 995 43200 < th dose dependent rect. 15 18
4 232.97 atmosphere 995 43200 > th dose independent rect. 18 17
7 233.36 radiation 30 4320 < th dose independent rect. 7 1
9 233.74 radiation 30 4320 < th dose independent rect. 24 8
10 233.75 radiation 20 4320 > th dose dependent rect. 7 1
29 233.98 radiation 10 1440 < th dose independent rect. 15 2
32 234.05 radiation 1 1440 > th dose dependent rect. 15 17
36 234.16 radiation 30 4320 < th dose independent rect. 2 6
37 234.17 atmosphere 995 43200 < th dose independent rect. 18 17
40 234.25 humidity 70 1440 < th dose independent rect. 17 20
42 234.46 radiation 30 4320 < th dose independent rect. 17 15
45 234.58 atmosphere 995 43200 < th dose dependent sin 15 NA
47 234.63 temperature 20 1440 < th dose dependent rect. 4 1
48 234.65 humidity 80 1440 < th dose dependent rect. 15 21
55 235.05 atmosphere 995 43200 < th dose independent rect. 17 19
56 235.16 humidity 70 1440 > th dose independent rect. 17 20
59 235.28 radiation 40 1440 < th dose dependent rect. 15 17
67 235.74 atmosphere 995 43200 > th dose independent sin 7 NA
74 235.96 humidity 80 1440 < th dose dependent sin 9 NA
83 236.24 radiation 10 1440 < th dose dependent rect. 11 21
91 236.55 humidity 90 1440 < th dose dependent sin 4 NA
99 236.80 atmosphere 995 43200 < th dose independent sin 9 NA
107 237.06 humidity 90 1440 < th dose dependent rect. 2 12
108 237.06 humidity 90 1440 < th dose dependent rect. 2 15
125 237.28 atmosphere 995 43200 < th dose dependent sin 11 NA
126 237.28 humidity 80 1440 < th dose dependent rect. 20 22
128 237.30 radiation 10 1440 < th dose dependent rect. 9 23
144 237.50 humidity 80 1440 < th dose dependent rect. 23 19
150 237.54 humidity 80 1440 < th dose dependent rect. 23 23
154 237.57 humidity 80 1440 < th dose dependent no NA NA
161 237.59 humidity 80 1440 < th dose dependent rect. 5 23
175 237.66 radiation 10 1440 < th dose independent rect. 15 12
192 237.73 radiation 10 1440 < th dose independent rect. 15 10
213 237.81 radiation 10 1440 < th dose independent rect. 15 8
238 237.93 radiation 20 1440 < th dose independent rect. 15 17
245 237.95 radiation 10 1440 < th dose dependent rect. 5 13
264 238.03 humidity 90 4320 > th dose dependent rect. 7 3
284 238.14 atmosphere 995 43200 > th dose independent rect. 20 19
287 238.14 radiation 10 1440 < th dose dependent rect. 20 22
290 238.15 radiation 10 1440 < th dose dependent rect. 24 18
291 238.15 radiation 10 1440 < th dose dependent rect. 22 20
297 238.18 radiation 10 1440 < th dose dependent rect. 2 16
304 238.22 humidity 80 1440 < th dose dependent rect. 11 23
314 238.34 humidity 60 1440 > th dose independent rect. 14 21
332 238.46 radiation 30 1440 < th dose dependent sin 12 NA
337 238.50 radiation 10 1440 < th dose dependent rect. 5 22
343 238.53 radiation 10 1440 < th dose dependent rect. 5 20
349 238.56 radiation 10 1440 < th dose dependent rect. 5 18
368 238.72 humidity 80 1440 > th dose independent rect. 6 3
377 238.74 radiation 10 1440 < th dose dependent rect. 15 23
387 238.76 radiation 10 1440 < th dose dependent rect. 24 23
388 238.77 radiation 10 1440 < th dose dependent no NA NA
395 238.77 radiation 10 1440 < th dose dependent rect. 2 23
405 238.79 radiation 10 1440 < th dose dependent rect. 2 21
435 238.86 radiation 1 1440 > th dose dependent sin 12 NA
441 238.92 radiation 10 1440 < th dose independent sin 14 NA
458 239.02 radiation 10 1440 < th dose independent rect. 11 20
499 239.27 atmosphere 995 43200 < th dose independent rect. 21 14
502 239.27 atmosphere 995 43200 < th dose independent rect. 21 18
532 239.44 humidity 70 1440 < th dose dependent rect. 15 3
569 239.61 wind 1 14400 < th dose dependent rect. 1 1
611 239.78 radiation 20 1440 < th dose independent sin 12 NA
614 239.79 humidity 70 1440 < th dose independent sin 10 NA
617 239.81 radiation 10 1440 > th dose independent rect. 15 21
677 239.84 temperature 20 1440 > th dose independent rect. 6 1
721 240.00 humidity 70 1440 < th dose dependent sin 19 NA
739 240.02 radiation 10 1440 < th dose independent rect. 11 7
760 240.12 radiation 10 1440 < th dose dependent sin 0 NA
766 240.15 temperature 20 1440 < th dose independent rect. 6 1
772 240.18 atmosphere 995 43200 < th dose dependent rect. 21 12
796 240.24 radiation 10 1440 > th dose independent rect. 15 19
807 240.33 atmosphere 995 43200 > th dose independent rect. 4 4
840 240.47 radiation 20 4320 > th dose independent rect. 6 2
864 240.50 humidity 50 1440 > th dose dependent rect. 2 15
887 240.60 humidity 60 1440 > th dose independent rect. 14 4
912 240.65 humidity 60 1440 > th dose independent rect. 15 2
919 240.68 atmosphere 995 43200 > th dose independent rect. 2 7
922 240.69 radiation 10 1440 > th dose independent rect. 15 17
950 240.75 radiation 1 1440 > th dose dependent rect. 15 21
954 240.78 radiation 10 1440 < th dose independent rect. 9 22
979 240.84 humidity 70 1440 < th dose independent rect. 17 17
987 240.92 atmosphere 995 43200 < th dose independent rect. 4 4
990 240.93 wind 1 14400 > th dose independent rect. 1 1
994 240.94 radiation 10 1440 < th dose independent rect. 9 9
997 240.94 atmosphere 995 43200 < th dose dependent rect. 3 5