BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0225800 Os06g0225800|AB188835
         (307 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21940.4  | chr2:9351106-9352881 FORWARD LENGTH=305            277   5e-75
AT4G39540.3  | chr4:18378561-18380253 FORWARD LENGTH=309          245   2e-65
AT3G26900.1  | chr3:9912314-9914424 REVERSE LENGTH=281            132   2e-31

>AT2G21940.4 | chr2:9351106-9352881 FORWARD LENGTH=305
          Length = 304

 Score =  277 bits (709), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 132/216 (61%), Positives = 169/216 (78%)

Query: 80  LLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGMPSVA 139
           +LKRK+EEV  YLNGR +YLVGMMGSGK+TV K++++VLGY+FFD D L+EQA+   SVA
Sbjct: 89  ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVA 148

Query: 140 QIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNWKYMKKGLSVWLDVPLDA 199
           +IF  H E FFR  E+  L+ LSS  ++VV+TGGGAVIRP+NWKYM KG+S+WLDVPL+A
Sbjct: 149 EIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEA 208

Query: 200 LARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDAYANADARVSLEEIAAKQGH 259
           LA RIA VGT SRPLL   S D Y+ AF +LS + ++RG+AY NA+ARVSLE IAAK+G+
Sbjct: 209 LAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGY 268

Query: 260 DDVSKLTPTDIAIEALLKIENFVTEHSTSSGPVGDL 295
            +VS LTPT+IAIEA  ++ +F+ +  T   P GDL
Sbjct: 269 KNVSDLTPTEIAIEAFEQVLSFLEKEETMEIPDGDL 304



>AT4G39540.3 | chr4:18378561-18380253 FORWARD LENGTH=309
          Length = 308

 Score =  245 bits (625), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/234 (54%), Positives = 166/234 (70%), Gaps = 11/234 (4%)

Query: 71  LHNSVDE-ALLLKRKSEEVLFYLNGRCIYLV--------GMMGSGKSTVAKILAEVLGYS 121
           LH+  DE   +LK+K+EEV  YLNGR +YL+        GMMGSGK+TV KI+A  LGY+
Sbjct: 74  LHSPFDEEQQILKKKAEEVKPYLNGRSMYLLNSFLVNALGMMGSGKTTVGKIMARSLGYT 133

Query: 122 FFDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSM-RRLVVATGGGAVIRPV 180
           FFD D L+EQA+   SVA+IF+   E+ FR+ E+  L+ LS M  ++VV+TGGGAVIRP+
Sbjct: 134 FFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPI 193

Query: 181 NWKYMKKGLSVWLDVPLDALARRIAQVGTASRPLL-DQPSSDPYTAAFSKLSMLAEQRGD 239
           NWKYM KG+S+WLDVPL+ALA RIA VGT SRPLL D  S D YTAA ++LS + + RG+
Sbjct: 194 NWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGE 253

Query: 240 AYANADARVSLEEIAAKQGHDDVSKLTPTDIAIEALLKIENFVTEHSTSSGPVG 293
           AY  A ARVSLE I  K G+  VS LTP +IAIEA  ++++++ +    + P G
Sbjct: 254 AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKEDGMARPDG 307



>AT3G26900.1 | chr3:9912314-9914424 REVERSE LENGTH=281
          Length = 280

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 112/203 (55%), Gaps = 10/203 (4%)

Query: 80  LLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGMPSVA 139
           ++KRK+ ++   L G  I+LVG+  S K+   K+LAE L Y +FDSD L+ +A G    A
Sbjct: 75  VVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSA 134

Query: 140 QIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNWKYMKKGLSVWLDVPLDA 199
           Q  KE  E  F+++E+ VL+ LSSM RLVV  G GAV    N   ++ G+S+W+DVPLD 
Sbjct: 135 QALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLDI 194

Query: 200 LARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDAYANADARVSLEEIAAKQGH 259
            A+     G       D   S+P    F  L    E+    Y  AD  +SLE+IA K   
Sbjct: 195 TAK-----GDD-----DSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATKLEF 244

Query: 260 DDVSKLTPTDIAIEALLKIENFV 282
           +D+  +T  DIA+E L +IE   
Sbjct: 245 EDLEAVTSEDIALEILKEIEKLT 267



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,124,384
Number of extensions: 191100
Number of successful extensions: 861
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 4
Length of query: 307
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 209
Effective length of database: 8,419,801
Effective search space: 1759738409
Effective search space used: 1759738409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)