Os01g0102600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Shikimate kinase domain containing protein.
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Os01g0102600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Shikimate kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.41 | 0.371 | 13.6 | -1.01 | 0.551 | -1.3 | -0.164 | -0.345 | -0.75 | 18.6 | 80 | 1534 | -- | -- |
| 62.51 | 0.368 | 13.6 | -1.03 | 0.553 | -1.31 | -0.161 | -- | -0.755 | 18.6 | 80.03 | 1534 | -- | -- |
| 62.48 | 0.368 | 13.6 | -1.01 | 0.551 | -1.3 | -- | -0.349 | -0.751 | 18.6 | 80.06 | 1534 | -- | -- |
| 62.58 | 0.368 | 13.6 | -1.03 | 0.548 | -1.32 | -- | -- | -0.756 | 18.6 | 80.15 | 1534 | -- | -- |
| 68.21 | 0.385 | 13.6 | -1.01 | -- | -1.41 | -- | 0.0689 | -0.77 | -- | 80 | 1926 | -- | -- |
| 82.6 | 0.426 | 13.6 | -1.02 | 0.586 | -- | -0.295 | -- | -0.683 | 18.1 | -- | -- | -- | -- |
| 82.82 | 0.426 | 13.6 | -1.01 | 0.585 | -- | -- | -- | -0.684 | 18.1 | -- | -- | -- | -- |
| 68.21 | 0.385 | 13.6 | -1.01 | -- | -1.41 | -- | -- | -0.77 | -- | 80.02 | 1926 | -- | -- |
| 88.67 | 0.439 | 13.6 | -- | 0.399 | -1.26 | -- | -- | -0.671 | 18.6 | 83.99 | 1770 | -- | -- |
| 100.53 | 0.469 | 13.6 | -1.03 | -- | -- | -- | -- | -0.697 | -- | -- | -- | -- | -- |
| 109.95 | 0.49 | 13.6 | -- | 0.599 | -- | -- | -- | -0.571 | 18 | -- | -- | -- | -- |
| 92.33 | 0.448 | 13.6 | -- | -- | -1.46 | -- | -- | -0.712 | -- | 83.54 | 1989 | -- | -- |
| 128.58 | 0.529 | 13.6 | -- | -- | -- | -- | -- | -0.582 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.85 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 4 | 61.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 35 | 61.81 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 45 | 61.89 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 54 | 61.96 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 60 | 62.01 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 70 | 62.07 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 124 | 62.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 134 | 62.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 192 | 62.74 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 198 | 62.78 | humidity | 70 | 1440 | > th | dose dependent | sin | 20 | NA |
| 201 | 62.79 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 207 | 62.81 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 234 | 62.90 | humidity | 90 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 334 | 63.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 394 | 63.49 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 414 | 63.56 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 415 | 63.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 427 | 63.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 428 | 63.59 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 444 | 63.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 471 | 63.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 498 | 63.72 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 501 | 63.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 504 | 63.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 512 | 63.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 514 | 63.74 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 533 | 63.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 571 | 63.79 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 576 | 63.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 588 | 63.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 624 | 63.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 714 | 64.03 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 851 | 64.20 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 852 | 64.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 873 | 64.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 897 | 64.25 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 11 |
| 903 | 64.26 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 915 | 64.27 | humidity | 60 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 950 | 64.31 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 964 | 64.32 | humidity | 60 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 967 | 64.33 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 978 | 64.34 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |