BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0102600 Os01g0102600|AK064812
         (269 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26900.1  | chr3:9912314-9914424 REVERSE LENGTH=281            165   2e-41
AT2G21940.4  | chr2:9351106-9352881 FORWARD LENGTH=305             99   2e-21
AT4G39540.3  | chr4:18378561-18380253 FORWARD LENGTH=309           88   5e-18

>AT3G26900.1 | chr3:9912314-9914424 REVERSE LENGTH=281
          Length = 280

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 131/211 (62%), Gaps = 13/211 (6%)

Query: 64  RKTAEAVGDFRKTPIYIVGTDCTAKRNIAKLLANSIIYRYLCSEELLEDVLGGKDALNAF 123
           RK  +   + +   I++VG + + K N  KLLA ++ Y Y  S+ L+ +  GG  +  A 
Sbjct: 78  RKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQAL 137

Query: 124 RESDLNGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLRHGVSIWIDIPLELVVN 183
           +E+D   + E ETE LKQL+SMG LV+C GDGAV +  NL LLRHG+SIWID+PL++   
Sbjct: 138 KEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLDIT-- 195

Query: 184 DMLKTQATSDPDSFS-----EAMSRVRQRHDELKERYGVSDITVSVQNVASQLGYSSIDS 238
                 A  D DSF      E    ++  +++ ++ Y  +D+++S++ +A++L +  +++
Sbjct: 196 ------AKGDDDSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATKLEFEDLEA 249

Query: 239 VTLEDMVLEIVRQIERLIRAKSMMEAAGKPF 269
           VT ED+ LEI+++IE+L R K MME A +PF
Sbjct: 250 VTSEDIALEILKEIEKLTRVKKMMEEASRPF 280



>AT2G21940.4 | chr2:9351106-9352881 FORWARD LENGTH=305
          Length = 304

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 8/211 (3%)

Query: 61  ELLRKTAEAVGDF-RKTPIYIVGTDCTAKRNIAKLLANSIIYRYLCSEELLEDVLGGKDA 119
           ++L++ AE V  +     +Y+VG   + K  + KL++  + Y +   + L+E  + G   
Sbjct: 88  DILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSV 147

Query: 120 LNAFRESDLNGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLRHGVSIWIDIPLE 179
              F     N +   ET+ LK+L+S   +V+  G GAV+   N   +  G+SIW+D+PLE
Sbjct: 148 AEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLE 207

Query: 180 LVVNDMLKTQATSDP-------DSFSEAMSRVRQRHDELKERYGVSDITVSVQNVASQLG 232
            + + +      S P       D++S A  R+    DE  E Y  ++  VS++N+A++ G
Sbjct: 208 ALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRG 267

Query: 233 YSSIDSVTLEDMVLEIVRQIERLIRAKSMME 263
           Y ++  +T  ++ +E   Q+   +  +  ME
Sbjct: 268 YKNVSDLTPTEIAIEAFEQVLSFLEKEETME 298



>AT4G39540.3 | chr4:18378561-18380253 FORWARD LENGTH=309
          Length = 308

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 18/220 (8%)

Query: 61  ELLRKTAEAVGDF-RKTPIYIV--------GTDCTAKRNIAKLLANSIIYRYLCSEELLE 111
           ++L+K AE V  +     +Y++        G   + K  + K++A S+ Y +   + L+E
Sbjct: 83  QILKKKAEEVKPYLNGRSMYLLNSFLVNALGMMGSGKTTVGKIMARSLGYTFFDCDTLIE 142

Query: 112 DVLGGKDALNAFRESDLNGYLEVETEGLKQLTSM-GSLVLCCGDGAVMNSTNLGLLRHGV 170
             + G      F     + + E ETE LK+L+ M   +V+  G GAV+   N   +  G+
Sbjct: 143 QAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGI 202

Query: 171 SIWIDIPLELVVNDMLKTQATSDP--------DSFSEAMSRVRQRHDELKERYGVSDITV 222
           SIW+D+PLE + + +      S P        D+++ A++R+    D   E Y  +   V
Sbjct: 203 SIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARV 262

Query: 223 SVQNVASQLGYSSIDSVTLEDMVLEIVRQIERLIRAKSMM 262
           S++N+  +LGY S+  +T  ++ +E   Q++  +  +  M
Sbjct: 263 SLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKEDGM 302



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,743,285
Number of extensions: 182690
Number of successful extensions: 568
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 3
Length of query: 269
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,447,217
Effective search space: 1452921324
Effective search space used: 1452921324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)