Os04g0640600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Shikimate kinase domain containing protein.
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Os04g0640600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Shikimate kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.93 | 0.598 | 8.86 | -3.08 | 0.985 | -2.28 | 0.594 | 1.52 | -0.223 | 4.83 | 25.66 | 559 | -- | -- |
| 164.17 | 0.597 | 8.83 | -2.8 | 0.942 | -2.42 | 0.797 | -- | -0.13 | 4.74 | 24.78 | 559 | -- | -- |
| 162.75 | 0.594 | 8.87 | -3.11 | 0.994 | -2.26 | -- | 1.7 | -0.229 | 4.72 | 25.6 | 545 | -- | -- |
| 165.56 | 0.599 | 8.83 | -2.81 | 0.927 | -2.43 | -- | -- | -0.124 | 4.53 | 24.5 | 546 | -- | -- |
| 197.77 | 0.655 | 8.88 | -3.17 | -- | -2.26 | -- | 1.76 | -0.229 | -- | 26.58 | 1037 | -- | -- |
| 251.32 | 0.743 | 8.72 | -2.15 | 0.819 | -- | 0.419 | -- | 0.355 | 3.53 | -- | -- | -- | -- |
| 251.82 | 0.743 | 8.73 | -2.16 | 0.819 | -- | -- | -- | 0.353 | 3.41 | -- | -- | -- | -- |
| 200.35 | 0.659 | 8.84 | -2.83 | -- | -2.39 | -- | -- | -0.133 | -- | 25 | 964 | -- | -- |
| 348.91 | 0.87 | 8.71 | -- | 0.856 | -1.28 | -- | -- | 0.395 | 3.82 | 24.29 | 428 | -- | -- |
| 289.5 | 0.795 | 8.73 | -2.12 | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
| 374.64 | 0.905 | 8.67 | -- | 0.776 | -- | -- | -- | 0.593 | 3.42 | -- | -- | -- | -- |
| 383.7 | 0.912 | 8.72 | -- | -- | -1.18 | -- | -- | 0.406 | -- | 24.74 | 807 | -- | -- |
| 408.52 | 0.943 | 8.67 | -- | -- | -- | -- | -- | 0.61 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 3 | 164.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 4 | 164.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 21 |
| 9 | 164.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 10 | 164.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 13 | 164.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 14 | 164.69 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 23 | 164.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 28 | 165.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 35 | 165.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 97 | 167.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 111 | 168.22 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 149 | 169.67 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 324 | 174.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 343 | 174.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 388 | 175.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 404 | 176.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 9 |
| 442 | 176.85 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 488 | 177.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 513 | 178.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 662 | 179.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 747 | 179.99 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 894 | 180.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 966 | 180.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |