BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0640600 Os04g0640600|AB188836
(287 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21940.4 | chr2:9351106-9352881 FORWARD LENGTH=305 279 1e-75
AT4G39540.3 | chr4:18378561-18380253 FORWARD LENGTH=309 248 2e-66
AT3G26900.1 | chr3:9912314-9914424 REVERSE LENGTH=281 135 2e-32
>AT2G21940.4 | chr2:9351106-9352881 FORWARD LENGTH=305
Length = 304
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 203/298 (68%), Gaps = 14/298 (4%)
Query: 1 MDAGVGLRAKPGAWAGL---------GNPRRSSTARVPVRFAVEKFA--QPLVLGSDRRS 49
M+A + R + +W G+ R S +V RF A QP RR+
Sbjct: 1 MEAAITQRIQYPSWVDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRA 60
Query: 50 CGAKLKVSCSRKPAGIDKT--YYSADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTV 107
+ S + + +T Y DE +LK+KAE+V PYLN R +YLVGMMGSGKTTV
Sbjct: 61 VSPAVSCSDNNSSGALLETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTV 119
Query: 108 GKILAEVLGYSFFDSDKLVEKAVGISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVA 167
GK++++VLGY+FFD D L+E+A+ +SVAEIF H E FFR E++ L+ LSS +++VV+
Sbjct: 120 GKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVS 179
Query: 168 TGGGAVIRPINWSYMKKGSTIWLDVPLDALARRIAAVGTASRPLLHQESGDPYAKAYAKL 227
TGGGAVIRPINW YM KG +IWLDVPL+ALA RIAAVGT SRPLLH ESGD Y+ A+ +L
Sbjct: 180 TGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRL 239
Query: 228 TALFEQRMDSYANADARVSLEHIAVKQGHSNVTTLTPSAIAIEALLKMESFLTEKAMI 285
+A++++R ++Y NA+ARVSLE+IA K+G+ NV+ LTP+ IAIEA ++ SFL ++ +
Sbjct: 240 SAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKEETM 297
>AT4G39540.3 | chr4:18378561-18380253 FORWARD LENGTH=309
Length = 308
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/225 (56%), Positives = 167/225 (74%), Gaps = 11/225 (4%)
Query: 73 DEALVLKQKAEDVVPYLNDRCIYLV--------GMMGSGKTTVGKILAEVLGYSFFDSDK 124
+E +LK+KAE+V PYLN R +YL+ GMMGSGKTTVGKI+A LGY+FFD D
Sbjct: 80 EEQQILKKKAEEVKPYLNGRSMYLLNSFLVNALGMMGSGKTTVGKIMARSLGYTFFDCDT 139
Query: 125 LVEKAVGISSVAEIFQLHSEAFFRDNESEVLRDLSSM-HRLVVATGGGAVIRPINWSYMK 183
L+E+A+ +SVAEIF+ E+ FR+ E+E L+ LS M H++VV+TGGGAVIRPINW YM
Sbjct: 140 LIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMH 199
Query: 184 KGSTIWLDVPLDALARRIAAVGTASRPLLH-QESGDPYAKAYAKLTALFEQRMDSYANAD 242
KG +IWLDVPL+ALA RIAAVGT SRPLLH ESGD Y A +L+ +++ R ++Y A
Sbjct: 200 KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKAS 259
Query: 243 ARVSLEHIAVKQGHSNVTTLTPSAIAIEALLKMESFL-TEKAMIR 286
ARVSLE+I +K G+ +V+ LTP+ IAIEA +++S+L E M R
Sbjct: 260 ARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKEDGMAR 304
>AT3G26900.1 | chr3:9912314-9914424 REVERSE LENGTH=281
Length = 280
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 134/255 (52%), Gaps = 14/255 (5%)
Query: 37 FAQPLVLGSDRR--SCGAKLKVSCS--RKPAGIDKTYYSADEALVLKQKAEDVVPYLNDR 92
+PL+ S R SC +++ S S + A + +D V+K+KA D+ P L
Sbjct: 31 LCKPLLSSSSTRLISCHSRIAPSRSLADQSASTGISVVDSDPIDVVKRKAMDIAPELKGA 90
Query: 93 CIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGISSVAEIFQLHSEAFFRDNES 152
I+LVG+ S KT GK+LAE L Y +FDSD L+ +A G + A+ + E F+++E+
Sbjct: 91 SIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQESET 150
Query: 153 EVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDVPLDALARRIAAVGTASRPLL 212
EVL+ LSSM RLVV G GAV N + ++ G +IW+DVPLD I A G
Sbjct: 151 EVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLD-----ITAKGDDDS--F 203
Query: 213 HQESGDPYAKAYAKLTALFEQRMDSYANADARVSLEHIAVKQGHSNVTTLTPSAIAIEAL 272
H E P + + L A +E+ Y AD +SLE IA K ++ +T IA+E L
Sbjct: 204 HSE---PSPELFDTLKASYEKSRKGYETADVSISLEKIATKLEFEDLEAVTSEDIALEIL 260
Query: 273 LKMESFLTEKAMIRN 287
++E K M+
Sbjct: 261 KEIEKLTRVKKMMEE 275
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,730,753
Number of extensions: 227389
Number of successful extensions: 793
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 790
Number of HSP's successfully gapped: 3
Length of query: 287
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 189
Effective length of database: 8,419,801
Effective search space: 1591342389
Effective search space used: 1591342389
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)