BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0640600 Os04g0640600|AB188836
(287 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0640600 Shikimate kinase domain containing protein 590 e-169
Os06g0225800 Shikimate kinase domain containing protein 345 2e-95
Os02g0749300 Similar to Shikimate kinase, chloroplast precu... 209 3e-54
Os01g0102600 Shikimate kinase domain containing protein 92 5e-19
>Os04g0640600 Shikimate kinase domain containing protein
Length = 287
Score = 590 bits (1520), Expect = e-169, Method: Compositional matrix adjust.
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MDAGVGLRAKPGAWAGLGNPRRSSTARVPVRFAVEKFAQPLVLGSDRRSCGAKLKVSCSR 60
MDAGVGLRAKPGAWAGLGNPRRSSTARVPVRFAVEKFAQPLVLGSDRRSCGAKLKVSCSR
Sbjct: 1 MDAGVGLRAKPGAWAGLGNPRRSSTARVPVRFAVEKFAQPLVLGSDRRSCGAKLKVSCSR 60
Query: 61 KPAGIDKTYYSADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFF 120
KPAGIDKTYYSADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFF
Sbjct: 61 KPAGIDKTYYSADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFF 120
Query: 121 DSDKLVEKAVGISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWS 180
DSDKLVEKAVGISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWS
Sbjct: 121 DSDKLVEKAVGISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWS 180
Query: 181 YMKKGSTIWLDVPLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYAN 240
YMKKGSTIWLDVPLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYAN
Sbjct: 181 YMKKGSTIWLDVPLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYAN 240
Query: 241 ADARVSLEHIAVKQGHSNVTTLTPSAIAIEALLKMESFLTEKAMIRN 287
ADARVSLEHIAVKQGHSNVTTLTPSAIAIEALLKMESFLTEKAMIRN
Sbjct: 241 ADARVSLEHIAVKQGHSNVTTLTPSAIAIEALLKMESFLTEKAMIRN 287
>Os06g0225800 Shikimate kinase domain containing protein
Length = 307
Score = 345 bits (886), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 193/226 (85%)
Query: 58 CSRKPAGIDKTYYSADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGY 117
C + G D + S DEAL+LK+K+E+V+ YLN RCIYLVGMMGSGK+TV KILAEVLGY
Sbjct: 61 CLKASRGHDSLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGY 120
Query: 118 SFFDSDKLVEKAVGISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPI 177
SFFDSDKLVE+AVG+ SVA+IF+ HSEAFFRDNES VLRDLSSM RLVVATGGGAVIRP+
Sbjct: 121 SFFDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPV 180
Query: 178 NWSYMKKGSTIWLDVPLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDS 237
NW YMKKG ++WLDVPLDALARRIA VGTASRPLL Q S DPY A++KL+ L EQR D+
Sbjct: 181 NWKYMKKGLSVWLDVPLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDA 240
Query: 238 YANADARVSLEHIAVKQGHSNVTTLTPSAIAIEALLKMESFLTEKA 283
YANADARVSLE IA KQGH +V+ LTP+ IAIEALLK+E+F+TE +
Sbjct: 241 YANADARVSLEEIAAKQGHDDVSKLTPTDIAIEALLKIENFVTEHS 286
>Os02g0749300 Similar to Shikimate kinase, chloroplast precursor (EC 2.7.1.71)
Length = 195
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/190 (58%), Positives = 138/190 (72%), Gaps = 5/190 (2%)
Query: 1 MDAGVGLRAKPGAWAGLGNPRRSST---ARVPVRFAVEKFAQPLVLGSDRRSCGAK--LK 55
M+AGVGL + A G+ RR S R + A+P V + + G+K
Sbjct: 1 MEAGVGLALQSRAAGFGGSDRRRSALYGGEGRARIGSLRVAEPAVAKAAVWARGSKPVAP 60
Query: 56 VSCSRKPAGIDKTYYSADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVL 115
+ + G + + S DEAL+LK+K+E+V+ YLN RCIYLVGMMGSGK+TVGKI++EVL
Sbjct: 61 LRAKKSSGGHETLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVL 120
Query: 116 GYSFFDSDKLVEKAVGISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIR 175
GYSFFDSDKLVE+AVG+ SVA+IF++HSEAFFRDNES VLRDLSSM RLVVATGGGAVIR
Sbjct: 121 GYSFFDSDKLVEQAVGMPSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGGGAVIR 180
Query: 176 PINWSYMKKG 185
P+NW YMKKG
Sbjct: 181 PVNWKYMKKG 190
>Os01g0102600 Shikimate kinase domain containing protein
Length = 269
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 114/220 (51%), Gaps = 7/220 (3%)
Query: 66 DKTYYSADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKL 125
++T + ++ L +K + V IY+VG + K + K+LA + Y + S++L
Sbjct: 50 EQTLEELNPSVELLRKTAEAVGDFRKTPIYIVGTDCTAKRNIAKLLANSIIYRYLCSEEL 109
Query: 126 VEKAVGISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKG 185
+E +G F+ + + E+E L+ L+SM LV+ G GAV+ N ++ G
Sbjct: 110 LEDVLGGKDALNAFRESDLNGYLEVETEGLKQLTSMGSLVLCCGDGAVMNSTNLGLLRHG 169
Query: 186 STIWLDVPLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYANADARV 245
+IW+D+PL+ + + S P D +++A +++ ++ + Y +D V
Sbjct: 170 VSIWIDIPLELVVNDMLKTQATSDP-------DSFSEAMSRVRQRHDELKERYGVSDITV 222
Query: 246 SLEHIAVKQGHSNVTTLTPSAIAIEALLKMESFLTEKAMI 285
S++++A + G+S++ ++T + +E + ++E + K+M+
Sbjct: 223 SVQNVASQLGYSSIDSVTLEDMVLEIVRQIERLIRAKSMM 262
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,250,820
Number of extensions: 369457
Number of successful extensions: 1154
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 4
Length of query: 287
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 187
Effective length of database: 11,814,401
Effective search space: 2209292987
Effective search space used: 2209292987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)