BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0217900 Os06g0217900|AK103765
(223 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0217900 Cyclin-like domain containing protein 439 e-123
Os07g0620800 Cyclin-like domain containing protein 169 2e-42
Os09g0466100 Cyclin-like domain containing protein 151 5e-37
Os08g0479300 Cyclin-like domain containing protein 126 1e-29
Os03g0392000 124 5e-29
Os06g0236600 Similar to Cyclin delta-1 84 9e-17
>Os06g0217900 Cyclin-like domain containing protein
Length = 223
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/223 (95%), Positives = 212/223 (95%)
Query: 1 MEQLHSEFQQEEACMTQXXXXXXXXXXXKMEETVVPHPLDLQVCDAKYVFETRTIKRMEL 60
MEQLHSEFQQEEACMTQ KMEETVVPHPLDLQVCDAKYVFETRTIKRMEL
Sbjct: 1 MEQLHSEFQQEEACMTQLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMEL 60
Query: 61 AVLNALKWRMQAVTACSFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSE 120
AVLNALKWRMQAVTACSFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSE
Sbjct: 61 AVLNALKWRMQAVTACSFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSE 120
Query: 121 IAASVALVALEEHETSMFERVATCYKNLKKERVLRCYEMIQDKIIMRNIMRQSAGSVFSI 180
IAASVALVALEEHETSMFERVATCYKNLKKERVLRCYEMIQDKIIMRNIMRQSAGSVFSI
Sbjct: 121 IAASVALVALEEHETSMFERVATCYKNLKKERVLRCYEMIQDKIIMRNIMRQSAGSVFSI 180
Query: 181 PKSPIGVLDAAACISQQSEDTFVGSPATNYESSASSKRRRICR 223
PKSPIGVLDAAACISQQSEDTFVGSPATNYESSASSKRRRICR
Sbjct: 181 PKSPIGVLDAAACISQQSEDTFVGSPATNYESSASSKRRRICR 223
>Os07g0620800 Cyclin-like domain containing protein
Length = 356
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 137/221 (61%), Gaps = 12/221 (5%)
Query: 10 QEEACMTQXXXXXXXXXXXKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWR 69
+E+ M Q KMEETVVP P+DLQV DA+YVFE R IKRMEL V+ LKWR
Sbjct: 134 HDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWR 193
Query: 70 MQAVTACSFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSEIAASVALVA 129
+QAVT SFI Y+L KFN+ PS + S DL + T K + FL FRPSEIAA+V L
Sbjct: 194 LQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPSEIAAAVVLAV 253
Query: 130 LEEHETSMFER-VATCYKNLKKERVLRCYEMIQDKIIMRNIMRQSAGSVFSIPKSPIGVL 188
L E++ +F + + KE V+RCYE++ +K +++ I +A S S+P SPI VL
Sbjct: 254 LAENQFLVFNSALGESEIPVNKEMVMRCYELMVEKALVKKIRNSNASS--SVPHSPITVL 311
Query: 189 DAAACISQQSEDTFVGSPATN--------YESSASSKRRRI 221
D AAC S +S+DT +GS +N +S+ +SKRRR+
Sbjct: 312 D-AACFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRRRL 351
>Os09g0466100 Cyclin-like domain containing protein
Length = 356
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 129/220 (58%), Gaps = 21/220 (9%)
Query: 15 MTQXXXXXXXXXXXKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWRMQAVT 74
MTQ KMEET VP LDLQV + +YVFE +TI+RMEL VL+ LKWRMQAVT
Sbjct: 147 MTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVT 206
Query: 75 ACSFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSEIAASVALVAL-EEH 133
S++DY+L + N D PS + S +LIL + E L FRPSEIAA+VA + EEH
Sbjct: 207 PFSYVDYFLRELNGGDPPSGRSALLSSELILCIARGTECLGFRPSEIAAAVAAAVVGEEH 266
Query: 134 ETSMFERVATCYKNLKKERVLRCYEMIQDKIIMRNIMRQSAGSVF---SIPKSPIGVLDA 190
+ ++ KER+ C E+IQ + + + S VF SIP+SP GVLDA
Sbjct: 267 ---------AAFSHVNKERMSHCQEVIQ-AMELIHPKPSSPSRVFVSSSIPRSPTGVLDA 316
Query: 191 AACISQQSEDTFVGS----PATNYE---SSASSKRRRICR 223
A C+S +S+D+ V S + YE S SSKRR+I R
Sbjct: 317 AGCLSYRSDDSAVASHYAASSWGYEHDSSPVSSKRRKISR 356
>Os08g0479300 Cyclin-like domain containing protein
Length = 383
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 129/254 (50%), Gaps = 39/254 (15%)
Query: 1 MEQLHSEFQQEEA--CMTQXXXXXXXXXXXKMEETVVPHPLDLQVCDAKYVFETRTIKRM 58
+++ S+++ E MTQ KMEETVVP LDLQ+ + +++FE TI RM
Sbjct: 138 LDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRM 197
Query: 59 ELAVLNALKWRMQAVTACSFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRP 118
EL VL L WRMQAVT S+IDY+L K N + S L RS +LIL FL FRP
Sbjct: 198 ELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSELILRIAAGTGFLEFRP 257
Query: 119 SEIAASVALVALEEHETSMFERVATCYKNLKKERVLRCYEMIQDKIIMRNIMRQSAGSVF 178
SEIAA+VA E + E +A + ++ K RVL+C E IQD S ++
Sbjct: 258 SEIAAAVAATVAGEATGVVEEDIAEAFTHVDKGRVLQCQEAIQDH-------HYSMATIN 310
Query: 179 SIPKSP-------------------IGVLDAAACISQQSEDTFVGSPATN--------YE 211
++ P + VLD A C+S +S+DT + A++ ++
Sbjct: 311 TVQPKPASTRRGSASASSSSVPESPVAVLD-AGCLSYKSDDTDAATIASHGGGRRKSCFD 369
Query: 212 SS--ASSKRRRICR 223
SS S KRR++ R
Sbjct: 370 SSPVTSKKRRKLSR 383
>Os03g0392000
Length = 386
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 15/206 (7%)
Query: 29 KMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWRMQAVTACSFIDYYLHKFND 88
KMEET P LDLQVC+ +YVF+ TI RME+ VL LKWRMQAVT ++I ++L K N+
Sbjct: 164 KMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINE 223
Query: 89 DDTPSTSALSRSVDLILSTCKVAEFLVFRPSEIAASVALVALEEHETSM-FERVATCYK- 146
+ ++ +SR ++ILST K FL FRPSEIA +VAL + + + F V K
Sbjct: 224 GNRITSELISRCTEIILSTMKATVFLRFRPSEIATAVALSVVADGGRVLDFGGVLESSKL 283
Query: 147 NLKKERVLRCYEMIQD-KIIMRNIMRQSAGSVFSIPKSP-----IGVLDAAACISQQSE- 199
+ K+ V RC++ +Q+ ++M+N +G S+ P +G A +S++ E
Sbjct: 284 PVDKDNVGRCHQAMQEMALVMQNSTASPSGECVSLQSGPRDELEMGWAPFAITVSEKEES 343
Query: 200 -----DTF-VGSPATNYESSASSKRR 219
D + G A Y A +RR
Sbjct: 344 ERRCDDGWRRGGEAAQYCEQADEQRR 369
>Os06g0236600 Similar to Cyclin delta-1
Length = 347
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Query: 29 KMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWRMQAVTACSFIDYYLHKFND 88
KMEE+ P LDLQ+ +++FE RTI+RMEL VL L WR+++VT +F+D++ K
Sbjct: 182 KMEESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGS 241
Query: 89 DDTPSTSALSRSVDLILSTCKVAEFLVFRPSEIAASVALVALEEHETSMFERVATCYK-- 146
S R+ +ILS EFL S +AA+ L A+ E +M R + +
Sbjct: 242 SGRSSRILALRACQIILSAIHELEFLNHCASSMAAAAVLFAVNESPAAMSHRSSVSSESA 301
Query: 147 -----NLKKERVLRCYEMIQ 161
L +ER+ CY+++Q
Sbjct: 302 ASWCIGLTEERISSCYQLLQ 321
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,440,445
Number of extensions: 215606
Number of successful extensions: 559
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 7
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)