BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0217700 Os06g0217700|AK062617
(223 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0217700 Conserved hypothetical protein 357 3e-99
Os02g0759900 Conserved hypothetical protein 99 2e-21
Os09g0465800 Conserved hypothetical protein 98 4e-21
Os06g0264800 Conserved hypothetical protein 94 1e-19
Os08g0430600 Conserved hypothetical protein 92 2e-19
Os02g0731600 Conserved hypothetical protein 87 8e-18
>Os06g0217700 Conserved hypothetical protein
Length = 223
Score = 357 bits (917), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 193/223 (86%), Positives = 193/223 (86%)
Query: 1 MDALVCTNAFATAIAAGRFPLPRGRSPPYAAAAVPALRSRRCLPTRGLLRLRCARGVDWT 60
MDALVCTNAFATAIAAGRFPLPRGRSPPYAAAAVPALRSRRCLPTRGLLRLRCARGVDWT
Sbjct: 1 MDALVCTNAFATAIAAGRFPLPRGRSPPYAAAAVPALRSRRCLPTRGLLRLRCARGVDWT 60
Query: 61 DPSFVAVAEKPDAGAEAWKALASAXXXXXXXXXXXXXXAINGDGGYSVEESVVLPPFEQX 120
DPSFVAVAEKPDAGAEAWKALASA AINGDGGYSVEESVVLPPFEQ
Sbjct: 61 DPSFVAVAEKPDAGAEAWKALASAGGGGIEEEEDGPFEAINGDGGYSVEESVVLPPFEQS 120
Query: 121 XXXXXXXXXXXXXXXQALSSKLDFKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKI 180
QALSSKLDFKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKI
Sbjct: 121 LVAAVADSVEDDALSQALSSKLDFKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKI 180
Query: 181 LQIVGLGYTIWFSTRYLLFKENRDELFVKVDDLKRKITGYGDE 223
LQIVGLGYTIWFSTRYLLFKENRDELFVKVDDLKRKITGYGDE
Sbjct: 181 LQIVGLGYTIWFSTRYLLFKENRDELFVKVDDLKRKITGYGDE 223
>Os02g0759900 Conserved hypothetical protein
Length = 205
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 66/78 (84%)
Query: 140 SKLDFKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTIWFSTRYLLF 199
SKLD + T T V+YGSGA + W+LS+VVSAIDSIPL PK+L+++G GY+IWF++RYLLF
Sbjct: 127 SKLDIQVTPTLVLYGSGALVVLWVLSSVVSAIDSIPLVPKVLELIGTGYSIWFTSRYLLF 186
Query: 200 KENRDELFVKVDDLKRKI 217
KE+RD+LF K +DLK +I
Sbjct: 187 KESRDKLFAKFEDLKERI 204
>Os09g0465800 Conserved hypothetical protein
Length = 181
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 63/79 (79%)
Query: 141 KLDFKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTIWFSTRYLLFK 200
+LD + + T ++YG+ A + WI S VVSA+DS+PL P+++++VGLG+T+WF++RYL+FK
Sbjct: 99 ELDSENSYTALVYGTSALVTIWISSIVVSALDSVPLVPQVMEVVGLGFTVWFTSRYLIFK 158
Query: 201 ENRDELFVKVDDLKRKITG 219
ENRDEL ++ +K++I G
Sbjct: 159 ENRDELITRIGSIKKQILG 177
>Os06g0264800 Conserved hypothetical protein
Length = 156
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 56/76 (73%)
Query: 144 FKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTIWFSTRYLLFKENR 203
++ TF++Y GA +A W+ + VV AI+S+PL PKIL++VGLGYT WF RYLLFKE+R
Sbjct: 79 IEDKPTFLLYSGGAVVALWLTTVVVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKESR 138
Query: 204 DELFVKVDDLKRKITG 219
EL ++ LK+KI G
Sbjct: 139 KELATDIETLKKKIAG 154
>Os08g0430600 Conserved hypothetical protein
Length = 159
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 138 LSSKLD-FKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTIWFSTRY 196
L K D + S+ + YG GA IA W+ S VV A+DS+P+ P IL++VGLGY+ WF RY
Sbjct: 74 LKEKWDAIENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILELVGLGYSGWFVYRY 133
Query: 197 LLFKENRDELFVKVDDLKRKITG 219
LLFKENR+EL D LK++ITG
Sbjct: 134 LLFKENREELANGFDALKKRITG 156
>Os02g0731600 Conserved hypothetical protein
Length = 108
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 136 QALSSKLDFKET-STFVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTIWFST 194
+ L +K D E ST + Y GA IA W+ S +V A++S+PL PK +++VGLGYT WF
Sbjct: 22 EDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGWFVY 81
Query: 195 RYLLFKENRDELFVKVDDLKRKITG 219
RYLLFKE+R EL VD LK++I G
Sbjct: 82 RYLLFKESRKELADDVDSLKKRIAG 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,206,719
Number of extensions: 267160
Number of successful extensions: 827
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 826
Number of HSP's successfully gapped: 6
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)