BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0184400 Os06g0184400|Os06g0184400
(552 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0184400 SMAD/FHA domain containing protein 1036 0.0
Os08g0280200 C2 calcium/lipid-binding region, CaLB domain c... 337 9e-93
Os02g0794900 C2 calcium/lipid-binding region, CaLB domain c... 320 1e-87
Os04g0245000 C2 calcium/lipid-binding region, CaLB domain c... 289 5e-78
Os03g0428600 105 6e-23
>Os06g0184400 SMAD/FHA domain containing protein
Length = 552
Score = 1036 bits (2679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/552 (91%), Positives = 505/552 (91%)
Query: 1 MSLFRRLFHRRPPQGLVEISDNIFVFNHCFSTDFFEEDELKPYIGGILKQLIGRYSIDSF 60
MSLFRRLFHRRPPQGLVEISDNIFVFNHCFSTDFFEEDELKPYIGGILKQLIGRYSIDSF
Sbjct: 1 MSLFRRLFHRRPPQGLVEISDNIFVFNHCFSTDFFEEDELKPYIGGILKQLIGRYSIDSF 60
Query: 61 MVFNFEGSKKDNQIACIFSDFDMSVMGYPRNYEGCPLLTMEMIHHFVRSSESWLSLGQDN 120
MVFNFEGSKKDNQIACIFSDFDMSVMGYPRNYEGCPLLTMEMIHHFVRSSESWLSLGQDN
Sbjct: 61 MVFNFEGSKKDNQIACIFSDFDMSVMGYPRNYEGCPLLTMEMIHHFVRSSESWLSLGQDN 120
Query: 121 FLLIHSEQGGWPVXXXXXXXXXXXXRRYNNERKALEMVYKQAPPGLVEHFSPLNPAPSQM 180
FLLIHSEQGGWPV RRYNNERKALEMVYKQAPPGLVEHFSPLNPAPSQM
Sbjct: 121 FLLIHSEQGGWPVLAFALAALLLYLRRYNNERKALEMVYKQAPPGLVEHFSPLNPAPSQM 180
Query: 181 RYLKYVSRRHMSPEQWPPADRMINLNCVIIRGVPNFDGKGGCRPILQIYGPDPFAPNDKS 240
RYLKYVSRRHMSPEQWPPADRMINLNCVIIRGVPNFDGKGGCRPILQIYGPDPFAPNDKS
Sbjct: 181 RYLKYVSRRHMSPEQWPPADRMINLNCVIIRGVPNFDGKGGCRPILQIYGPDPFAPNDKS 240
Query: 241 TKVLFSTPKTSDSVQLYTQEDSEIIKFNARCPVQGDVVMECISLDENFEHEVMVFRVMFN 300
TKVLFSTPKTSDSVQLYTQEDSEIIKFNARCPVQGDVVMECISLDENFEHEVMVFRVMFN
Sbjct: 241 TKVLFSTPKTSDSVQLYTQEDSEIIKFNARCPVQGDVVMECISLDENFEHEVMVFRVMFN 300
Query: 301 MAFIEXXXXXXXXXXXXXXXXTKLRFPVDFRVEVIFSEMDTITSLNSSQLSSEDKENFSR 360
MAFIE TKLRFPVDFRVEVIFSEMDTITSLNSSQLSSEDKENFSR
Sbjct: 301 MAFIEDNLLLLDRDQIDILWDTKLRFPVDFRVEVIFSEMDTITSLNSSQLSSEDKENFSR 360
Query: 361 VEDAFSHLDWSTKSDDVTTNATEQNGSNNEHDGFDAVSLQXXXXXXXXXXHSLLGTRSVQ 420
VEDAFSHLDWSTKSDDVTTNATEQNGSNNEHDGFDAVSLQ HSLLGTRSVQ
Sbjct: 361 VEDAFSHLDWSTKSDDVTTNATEQNGSNNEHDGFDAVSLQETENSNSTSEHSLLGTRSVQ 420
Query: 421 VIQMETEHNHSSAPTFDIVKDPVADTHSLPETYSLALESQEHKLFEDSSPRELPKLDTTK 480
VIQMETEHNHSSAPTFDIVKDPVADTHSLPETYSLALESQEHKLFEDSSPRELPKLDTTK
Sbjct: 421 VIQMETEHNHSSAPTFDIVKDPVADTHSLPETYSLALESQEHKLFEDSSPRELPKLDTTK 480
Query: 481 NNPNSDLPSANSRDSEAAGDAAVAEWSDTNTDTFLSDTXXXXXXXXXQKFDEDSMEAGIV 540
NNPNSDLPSANSRDSEAAGDAAVAEWSDTNTDTFLSDT QKFDEDSMEAGIV
Sbjct: 481 NNPNSDLPSANSRDSEAAGDAAVAEWSDTNTDTFLSDTPSSSSPSSPQKFDEDSMEAGIV 540
Query: 541 EIQTQTAEPQRC 552
EIQTQTAEPQRC
Sbjct: 541 EIQTQTAEPQRC 552
>Os08g0280200 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 481
Score = 337 bits (865), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 150/287 (52%), Positives = 205/287 (71%), Gaps = 1/287 (0%)
Query: 1 MSLFRRLFHRRPPQGLVEISDNIFVFNHCFSTDFFEEDELKPYIGGILKQLIGRYSIDSF 60
M+LFR+ F+R+PP GL+EI++ ++VF+ CF+TD F +D+ + YIG I+ QL ++ SF
Sbjct: 1 MALFRKFFYRKPPDGLLEITERVYVFDSCFTTDVFNDDKYQDYIGDIVAQLQCHFADASF 60
Query: 61 MVFNFEGSKKDNQIACIFSDFDMSVMGYPRNYEGCPLLTMEMIHHFVRSSESWLSLGQDN 120
MVFNF + + +A I S ++M VM YPR YEGCPL+T+EMIHHF+RS ESWLSL Q N
Sbjct: 61 MVFNFREGESQSLLANILSSYEMVVMDYPRQYEGCPLVTIEMIHHFLRSGESWLSLSQQN 120
Query: 121 FLLIHSEQGGWPVXXXXXXXXXXXXRRYNNERKALEMVYKQAPPGLVEHFSPLNPAPSQM 180
L++H E+GGW V ++Y E++ LEM+Y+QAP L++ SPLNP PSQ+
Sbjct: 121 VLIMHCERGGWAVLAFMLAGLLLYRKQYIGEQRTLEMIYRQAPRELIQLLSPLNPIPSQI 180
Query: 181 RYLKYVSRRHMSPEQWPPADRMINLNCVIIRGVPNFDGKGGCRPILQIYGPDPFAPNDKS 240
RYL Y+SRR++S WPP DR + L+CVI+R +P F+G+GGCRPI +IYG DP +
Sbjct: 181 RYLHYISRRNVSAV-WPPGDRALTLDCVILRNIPGFNGEGGCRPIFRIYGKDPLLATSNT 239
Query: 241 TKVLFSTPKTSDSVQLYTQEDSEIIKFNARCPVQGDVVMECISLDEN 287
KVLFSTPK S V+LY + D E+IK + C +QGDVV+ECISLD +
Sbjct: 240 PKVLFSTPKRSKYVRLYKKVDCELIKIDIHCHIQGDVVLECISLDAD 286
>Os02g0794900 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 1505
Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 163/377 (43%), Positives = 228/377 (60%), Gaps = 48/377 (12%)
Query: 25 VFNHCFSTDFFEEDELKPYIGGILKQLIGRYSIDSFMVFNFEGSKKDNQIACIFSDFDMS 84
VF+HCFS EED + +I G+ L+ + SFM+ NF +++ I I S++ M+
Sbjct: 53 VFDHCFSMKEMEEDHFEAHIRGVAAHLLDNFGDHSFMISNFGIRDEESPIYHILSEYGMT 112
Query: 85 VMGYPRNYEGCPLLTMEMIHHFVRSSESWLSLGQDNFLLIHSEQGGWPVXXXXXXXXXXX 144
V+ YP +YEGCPLLTMEM+H ++SSESWLSLGQ NFL++H EQG WP+
Sbjct: 113 VLDYPGHYEGCPLLTMEMVHCILKSSESWLSLGQRNFLIMHCEQGCWPILAFMLAALLIY 172
Query: 145 XRRYNNERKALEMVYKQAPPGLVEHFSPLNPAPSQMRYLKYVSRRHMSPEQWPPADRMIN 204
+Y++E+K L+M+YKQ+P L+E FSPLNP PSQ+RYL+YVS R++ PE WPPADR +
Sbjct: 173 LGQYSDEQKTLDMLYKQSPVELLEMFSPLNPMPSQLRYLRYVSMRNVVPE-WPPADRALT 231
Query: 205 LNCVIIRGVPNFDGKGGCRPILQIYGPDPFAPNDKSTKVLFSTPKTSDSVQLYTQEDSEI 264
L+ VI+R VP+F G+GG RPI +IYGPDP P D++ KVLFSTPK S+ V+ Y+Q D E+
Sbjct: 232 LDSVILRMVPDFHGQGGFRPIFRIYGPDPLMPTDQTPKVLFSTPKRSNVVRFYSQAD-EL 290
Query: 265 IKFNARCPVQGDVVMECISLDENFEHEVMVFRVMFNMAFIEXXXXXXXXXXXXXXXXTKL 324
+K N +C VQGDVV+ECI+L E+ + E M
Sbjct: 291 VKINLQCHVQGDVVLECINLYEDLDREDM------------------------------- 319
Query: 325 RFPVDFRVEVIFSEMDTITS-LNSSQLSSEDK-----ENFSRVEDAFSHLDWSTKSDDVT 378
VIFS+MD TS + + +S ++K E F++V D F+HLDW D +
Sbjct: 320 ---------VIFSDMDATTSHITTEPVSHQEKQGLGIEEFAKVLDIFNHLDWLDGKKDTS 370
Query: 379 TNATEQNGSNNEHDGFD 395
+ ++ S+ D
Sbjct: 371 LHIPQRKASSTSQGNID 387
>Os04g0245000 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 1510
Score = 289 bits (739), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 207/343 (60%), Gaps = 7/343 (2%)
Query: 1 MSLFRRLFHRRPPQGLVEISDNIFVFNHCFSTDFFEEDELKPYIGGILKQLIGRYSIDSF 60
M+L RRLF+R+PP L+EI+D ++VF+ CFST+ E+ E K Y+ I+ QL ++ S
Sbjct: 1 MALLRRLFYRKPPDRLLEIADRVYVFDCCFSTETMEQFEYKNYLDNIVLQLREQFVDSSL 60
Query: 61 MVFNFEGSKKDNQIACIFSDFDMSVMGYPRNYEGCPLLTMEMIHHFVRSSESWLSL-GQD 119
MVFNF K + ++ +FS + ++V YP Y GCPLL +EM+ HF+R SE WL L GQ
Sbjct: 61 MVFNFRDEGK-SLVSGLFSLYGITVKDYPCQYLGCPLLPLEMVLHFLRLSERWLMLEGQQ 119
Query: 120 NFLLIHSEQGGWPVXXXXXXXXXXXXRRYNNERKALEMVYKQAPPGLVEHFSPLNPAPSQ 179
NFLL+H E+GGWPV ++YN E + L MVYKQAP L++ + LNP PS
Sbjct: 120 NFLLMHCEKGGWPVLAFMLAGLLLYMKQYNGEERTLVMVYKQAPKELLQMLTTLNPQPSH 179
Query: 180 MRYLKYVSRRHMSPE-QWPPADRMINLNCVIIRGVPNFDGKGGCRPILQIYGPDPFAPND 238
+RYL+Y+ + M E +WP L+CVI+R VPNFDG GGCRPI+++YG D F D
Sbjct: 180 LRYLQYICK--MDDELEWPIQPIPFTLDCVILREVPNFDGVGGCRPIVRVYGQD-FLTVD 236
Query: 239 KSTKVLFSTPKTSDSVQLYTQEDSEI-IKFNARCPVQGDVVMECISLDENFEHEVMVFRV 297
K V+ K + Y Q+ I +K N VQGDVV+EC+ +D++ E E ++FRV
Sbjct: 237 KRCNVMLPPSKPRKHARRYKQQADNISVKLNVGSCVQGDVVLECLHIDDSLEDERLMFRV 296
Query: 298 MFNMAFIEXXXXXXXXXXXXXXXXTKLRFPVDFRVEVIFSEMD 340
MFN FI+ + RF F+ EV+FSE D
Sbjct: 297 MFNTYFIQSHILPLNFENIDVSWDAEQRFTKKFKAEVLFSEFD 339
>Os03g0428600
Length = 305
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 133/297 (44%), Gaps = 43/297 (14%)
Query: 1 MSLFRRLFHRRPPQGLVEISDNIFVFNHCFSTDFF----------EEDELKPYIGGILKQ 50
M+L R+LF R+ GL IS+ ++VFN C ST+ D L I +++
Sbjct: 1 MALLRKLFARKAMDGLSCISERVYVFNSCLSTEPLVVDDDDDEEARNDHL---ISTVIQL 57
Query: 51 LIGRYSIDSFMVFNFEGSKKDNQIACIFSDFDM------SVMGYPRNYEGCPLLTMEMIH 104
S M+ N + + + + + +V YP + P L +
Sbjct: 58 KSCHPHGASLMLLNLFAAGGGEEASSLLPVDALRRHGVAAVAEYPCGHRHGPSLPLATAR 117
Query: 105 HFVRSSESWLSL-GQDNFLLIHSEQGGWPVXXXXXXXXXXXXRRYNNERKA--------- 154
+ + WL GQ N LL+ ++G P Y E A
Sbjct: 118 ALLATCVDWLVTDGQRNVLLMRCDRGARPALALAMASLLV----YMEEEPAPPELVTTTT 173
Query: 155 LEMVYKQAP-PGLVEHFSPLNPAPSQMRYLKYVSR-RHMSPEQWPPADR-MINLNCVIIR 211
L VY +AP L+ S L+P PS +RYL+YV+R R M+ PP ++ L+C+I+R
Sbjct: 174 LAAVYGRAPVALLLAAGSALDPRPSHLRYLQYVARLRGMTTRHGPPTPSPLLVLDCLILR 233
Query: 212 GVPNFDGKGGCRPILQIYGPDPFA-------PNDKSTKVLFSTPKTSDSVQLYTQED 261
VP+FDG GGCRP+++++G A +D S K+LFSTP+ + Y Q D
Sbjct: 234 PVPDFDGNGGCRPVVRVHGRRDAAADYDGDRADDASPKILFSTPRIKQHFRQYNQVD 290
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,025,631
Number of extensions: 751183
Number of successful extensions: 1685
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1676
Number of HSP's successfully gapped: 5
Length of query: 552
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 446
Effective length of database: 11,501,117
Effective search space: 5129498182
Effective search space used: 5129498182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)