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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0245000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0398) R2 : 5.12e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0128 (0.0837) R2dN8 : 6.61e-05 R2N8 : 5.12e-05
σ : 0.749
deviance : 257.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
228.18 0.71 2.95 -0.0191 0.0381 0.887 -0.897 -8.29 0.0139 5.84 76 44 19.1 12.7
234.76 0.714 2.95 0.0745 0.0463 4.56 0.453 -- 0.0124 19.6 64.01 52 20.6 10.8
229.4 0.705 2.96 -0.026 0.0761 0.96 -- -8.53 0.00943 0.688 75 59 18.9 12.9
234.84 0.714 2.95 0.0733 0.11 4.73 -- -- 0.00809 0.187 63 29 19.8 11.9
229.97 0.706 2.96 -0.0414 -- 0.947 -- -8.57 0.00978 -- 75 57 18.9 12.8
254.5 0.748 2.96 -0.00337 0.0551 -- -1.05 -- -0.0192 5.86 -- -- -- --
256.7 0.75 2.96 -0.0138 0.104 -- -- -- -0.0162 1.72 -- -- -- --
235.6 0.715 2.95 0.0743 -- 4.69 -- -- 0.0085 -- 63.87 34 19.9 12
234.97 0.714 2.95 -- 0.111 4.68 -- -- -0.000937 0.261 63.88 29 19.9 12
257.35 0.75 2.95 -0.00957 -- -- -- -- -0.0138 -- -- -- -- --
256.7 0.749 2.96 -- 0.103 -- -- -- -0.0146 1.72 -- -- -- --
235.74 0.717 2.95 -- -- 4.66 -- -- 0.000252 -- 64.09 31 20.3 12.1
257.35 0.749 2.95 -- -- -- -- -- -0.0128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.41 humidity 80 30 < th dose dependent rect. 19 13
3 232.63 humidity 80 90 < th dose dependent rect. 4 3
4 232.85 humidity 80 90 < th dose independent rect. 4 3
17 233.87 humidity 70 10 < th dose independent rect. 17 16
25 234.19 radiation 30 30 > th dose dependent rect. 7 2
42 234.20 humidity 70 90 < th dose independent rect. 18 14
109 234.24 radiation 30 30 > th dose independent rect. 7 1
195 234.33 humidity 70 10 < th dose independent rect. 7 1
257 234.33 humidity 70 10 < th dose dependent rect. 7 1
436 235.71 humidity 50 90 < th dose independent rect. 13 1
437 235.71 humidity 50 90 < th dose dependent rect. 13 1
441 235.87 atmosphere 1000 90 < th dose dependent rect. 12 2
459 235.95 atmosphere 1000 90 < th dose independent rect. 12 1
668 239.58 atmosphere 1005 30 > th dose dependent rect. 7 1
725 241.16 radiation 30 30 < th dose independent sin 11 NA
756 241.66 temperature 30 30 > th dose dependent rect. 12 2
767 242.19 humidity 70 1440 > th dose independent rect. 1 6
777 242.52 temperature 20 90 > th dose dependent rect. 1 1
785 242.60 humidity 70 10 > th dose independent sin 11 NA
823 242.89 humidity 70 30 < th dose independent sin 11 NA
873 243.77 atmosphere 1000 90 < th dose independent rect. 12 16
881 243.98 atmosphere 1000 270 < th dose independent rect. 10 4
899 244.03 radiation 1 270 > th dose independent rect. 4 1
919 244.04 atmosphere 1005 90 < th dose dependent rect. 24 3
925 244.21 atmosphere 1000 270 < th dose independent rect. 9 19
928 244.31 humidity 70 1440 > th dose independent rect. 22 9
932 244.38 atmosphere 1005 10 < th dose dependent rect. 2 1
935 244.39 temperature 20 270 < th dose dependent rect. 4 1
954 244.66 atmosphere 1015 90 < th dose dependent rect. 24 14
964 244.82 humidity 80 10 < th dose dependent sin 10 NA
985 245.02 humidity 70 1440 > th dose independent rect. 7 1