Os06g0184400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SMAD/FHA domain containing protein.
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Os06g0184400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SMAD/FHA domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.73 | 0.378 | 9.65 | -0.358 | 2.31 | 2.88 | -0.971 | -1.87 | -0.227 | 14.4 | 0.4713 | 706 | -- | -- |
| 68.66 | 0.386 | 9.66 | -0.429 | 2.31 | 2.88 | -0.221 | -- | -0.228 | 14.4 | 0.48 | 705 | -- | -- |
| 66.93 | 0.381 | 9.66 | -0.408 | 2.31 | 2.93 | -- | -1.07 | -0.235 | 14.5 | 0.4745 | 710 | -- | -- |
| 68.66 | 0.386 | 9.67 | -0.442 | 2.45 | 3.07 | -- | -- | -0.247 | 14.6 | 0.479 | 701 | -- | -- |
| 84.09 | 0.427 | 9.65 | -0.271 | -- | 3.03 | -- | -0.67 | -0.153 | -- | 0.62 | 1134 | -- | -- |
| 85.31 | 0.433 | 9.65 | -0.697 | 1.84 | -- | -0.674 | -- | -0.371 | 9.94 | -- | -- | -- | -- |
| 87.07 | 0.437 | 9.65 | -0.723 | 1.85 | -- | -- | -- | -0.372 | 9.95 | -- | -- | -- | -- |
| 84.34 | 0.428 | 9.65 | -0.255 | -- | 3.21 | -- | -- | -0.143 | -- | 0.5578 | 1154 | -- | -- |
| 73.31 | 0.399 | 9.68 | -- | 2.75 | 3.54 | -- | -- | -0.201 | 15 | 0.4594 | 701 | -- | -- |
| 292.1 | 0.799 | 9.7 | -0.745 | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
| 100.86 | 0.47 | 9.63 | -- | 1.85 | -- | -- | -- | -0.292 | 9.98 | -- | -- | -- | -- |
| 85.96 | 0.432 | 9.64 | -- | -- | 3.25 | -- | -- | -0.116 | -- | 0.4837 | 1154 | -- | -- |
| 306.73 | 0.817 | 9.68 | -- | -- | -- | -- | -- | -0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.20 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 4 | 62.47 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 5 | 62.47 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 10 |
| 6 | 62.48 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 18 | 62.58 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 33 | 62.77 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 37 | 62.83 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 61 | 62.98 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 63 | 62.99 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 66 | 63.00 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 67 | 63.01 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 70 | 63.03 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 76 | 63.07 | humidity | 90 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 86 | 63.12 | humidity | 80 | 43200 | < th | dose dependent | sin | 8 | NA |
| 95 | 63.15 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 96 | 63.15 | humidity | 90 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 111 | 63.20 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 15 |
| 119 | 63.23 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 130 | 63.26 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 137 | 63.27 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 158 | 63.32 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 163 | 63.33 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 15 |
| 178 | 63.38 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 183 | 63.38 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 18 |
| 198 | 63.42 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 228 | 63.46 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 229 | 63.46 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 236 | 63.47 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 253 | 63.49 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 263 | 63.50 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 284 | 63.52 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 299 | 63.54 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 320 | 63.59 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 329 | 63.62 | humidity | 60 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 336 | 63.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 20 |
| 352 | 63.65 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 367 | 63.67 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 371 | 63.68 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 376 | 63.68 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 390 | 63.70 | humidity | 60 | 43200 | > th | dose independent | sin | 7 | NA |
| 420 | 63.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 456 | 63.76 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 19 |
| 463 | 63.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 19 |
| 465 | 63.78 | humidity | 60 | 43200 | < th | dose independent | sin | 7 | NA |
| 475 | 63.79 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 520 | 63.81 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 18 |
| 526 | 63.82 | humidity | 80 | 43200 | < th | dose independent | sin | 9 | NA |
| 620 | 63.88 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 669 | 63.91 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 8 |
| 688 | 63.92 | humidity | 70 | 43200 | < th | dose dependent | no | NA | NA |
| 690 | 63.92 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 10 |
| 716 | 63.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 826 | 64.01 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 831 | 64.01 | humidity | 70 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 902 | 64.08 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |