BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0182500 Os06g0182500|AK069056
(486 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0182500 Ubiquitin interacting motif domain containing ... 936 0.0
Os12g0596800 Ubiquitin interacting motif domain containing ... 643 0.0
Os03g0626600 Ubiquitin interacting motif domain containing ... 619 e-177
Os03g0267800 LIM, zinc-binding domain containing protein 531 e-151
>Os06g0182500 Ubiquitin interacting motif domain containing protein
Length = 486
Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/486 (93%), Positives = 453/486 (93%)
Query: 1 MGWLTKFFRGSTHKISEGQYHSKPAEETIWNGPSNSAVVTDVPSEFDNEDIARAISLSLL 60
MGWLTKFFRGSTHKISEGQYHSKPAEETIWNGPSNSAVVTDVPSEFDNEDIARAISLSLL
Sbjct: 1 MGWLTKFFRGSTHKISEGQYHSKPAEETIWNGPSNSAVVTDVPSEFDNEDIARAISLSLL 60
Query: 61 EEEQRKAKAIEKDMHLEEDEQLARAIQESLNVESPPRAREXXXXXXXXMYQPLPFMFSSG 120
EEEQRKAKAIEKDMHLEEDEQLARAIQESLNVESPPRARE MYQPLPFMFSSG
Sbjct: 61 EEEQRKAKAIEKDMHLEEDEQLARAIQESLNVESPPRARENGNANGGNMYQPLPFMFSSG 120
Query: 121 FRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERF 180
FRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERF
Sbjct: 121 FRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERF 180
Query: 181 HPKCDVCKQFIPTNMNGLIEYRAHPFWLQKYCPSHEVDGTPRCCSCERMEPRESRYVLLD 240
HPKCDVCKQFIPTNMNGLIEYRAHPFWLQKYCPSHEVDGTPRCCSCERMEPRESRYVLLD
Sbjct: 181 HPKCDVCKQFIPTNMNGLIEYRAHPFWLQKYCPSHEVDGTPRCCSCERMEPRESRYVLLD 240
Query: 241 DGRKLCLECLDSAVMDTSECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK 300
DGRKLCLECLDSAVMDTSECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK
Sbjct: 241 DGRKLCLECLDSAVMDTSECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK 300
Query: 301 TGHHHLPETRGLCLSEEQTVSTILRRPRMAGNKVMEMITEPYRLTRRCEVTAILILYGLP 360
TGHHHLPETRGLCLSEEQTVSTILRRPRMAGNKVMEMITEPYRLTRRCEVTAILILYGLP
Sbjct: 301 TGHHHLPETRGLCLSEEQTVSTILRRPRMAGNKVMEMITEPYRLTRRCEVTAILILYGLP 360
Query: 361 RLLTGSILAHEMMHAWLRLKGYRTLSPDVEEGICQVLAHMWIESEIIAXXXXXXXXXXXX 420
RLLTGSILAHEMMHAWLRLKGYRTLSPDVEEGICQVLAHMWIESEIIA
Sbjct: 361 RLLTGSILAHEMMHAWLRLKGYRTLSPDVEEGICQVLAHMWIESEIIAGSGSNGASTSSS 420
Query: 421 XXXXXXXXXXXXXQFERKLGDFFKHQIESDTSMAYGDGFRAGNRAVLQYGLKRTLEHIRL 480
QFERKLGDFFKHQIESDTSMAYGDGFRAGNRAVLQYGLKRTLEHIRL
Sbjct: 421 SSASTSSKKGGRSQFERKLGDFFKHQIESDTSMAYGDGFRAGNRAVLQYGLKRTLEHIRL 480
Query: 481 TGTFPF 486
TGTFPF
Sbjct: 481 TGTFPF 486
>Os12g0596800 Ubiquitin interacting motif domain containing protein
Length = 486
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/494 (64%), Positives = 372/494 (75%), Gaps = 16/494 (3%)
Query: 1 MGWLTKFFRGSTHKISEGQYHSKPAEETIWNGPSNSAVVTDVPSEFDNEDIARAISLSLL 60
MGWL K F+GS +++S G Y W+ +S E DNEDI RAI+LSL
Sbjct: 1 MGWLNKIFKGSVNRVSRGHYDGS------WHEGHSSDNARGAYDESDNEDIDRAIALSL- 53
Query: 61 EEEQRKAKAIEKDMHLEEDEQLARAIQESLNVESPPRAREXXXXXXXXMYQPLP--FMFS 118
EEQ K KA++ D +LEEDEQLARA+QESLN +SPPR + LP S
Sbjct: 54 SEEQNKGKAVDIDYNLEEDEQLARALQESLNADSPPRQNIPVENVPSEPPRELPPILFAS 113
Query: 119 SGFRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKE 178
SG RTCAGC + IGHGRFLSCM +VWHP+CFRC ACN+PI +YEF+M + PYHK+CYK+
Sbjct: 114 SGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKD 173
Query: 179 RFHPKCDVCKQFIPTNMNGLIEYRAHPFWLQKYCPSHEVDGTPRCCSCERMEPRESRYVL 238
FHPKCDVCK FIPTN NGLIEYRAHPFW+QKYCPSHE DGTPRCCSCERMEP + +Y+
Sbjct: 174 FFHPKCDVCKNFIPTNRNGLIEYRAHPFWMQKYCPSHEDDGTPRCCSCERMEPMDIKYIT 233
Query: 239 LDDGRKLCLECLDSAVMDTSECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEG 298
LDDGRKLCLECL+S++MDT ECQ LY++IQEF+EGLNMKVEQQVP+LLVERQALNEA+E
Sbjct: 234 LDDGRKLCLECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEALET 293
Query: 299 EKTGHHHLPETRGLCLSEEQTVSTILRRPRMA-GNKVMEMITEPYRLTRRCEVTAILILY 357
EK G HHLPETRGLCLSEEQ V TILRRP + GN++++MIT PY+L RRCEVTAILILY
Sbjct: 294 EKNG-HHLPETRGLCLSEEQIVRTILRRPIIGPGNRIIDMITAPYKLERRCEVTAILILY 352
Query: 358 GLPRLLTGSILAHEMMHAWLRLKGYRTLSPDVEEGICQVLAHMWIESEIIAXXXXX---- 413
GLPRL TGSILAHEMMHA+LRLKG+R+LSP VEEGICQVL+HMW+ESEII
Sbjct: 353 GLPRLQTGSILAHEMMHAYLRLKGFRSLSPQVEEGICQVLSHMWLESEIIFGSSIDISAT 412
Query: 414 -XXXXXXXXXXXXXXXXXXXXQFERKLGDFFKHQIESDTSMAYGDGFRAGNRAVLQYGLK 472
+FE+KLG F KHQIE+D+S AYGDGFRA NRAV YGL+
Sbjct: 413 SVASSSSSSSTPTTSKKGAKTEFEKKLGAFIKHQIETDSSEAYGDGFRAANRAVESYGLR 472
Query: 473 RTLEHIRLTGTFPF 486
TL H+++TG+FP+
Sbjct: 473 STLNHMKMTGSFPY 486
>Os03g0626600 Ubiquitin interacting motif domain containing protein
Length = 491
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 311/500 (62%), Positives = 379/500 (75%), Gaps = 25/500 (5%)
Query: 1 MGWLTKFFRGSTHKISEGQYHSKPAE-ETIWNGPSNSAVVTDVPSEFDNEDIARAISLSL 59
MGWL+K F+GS +++S G Y+ E + W+ + + D+EDI RAI+LSL
Sbjct: 1 MGWLSKIFKGSVNRVSRGHYNGNTHEGHSAWHTKAYE-------HDSDHEDIDRAIALSL 53
Query: 60 LEEEQRKAKAIEK---DMHLEEDEQLARAIQESLNVESPPR----AREXXXXXXXXMYQP 112
EE+QRK KA+++ D L EDEQLARA+QESLN E PPR ++ + P
Sbjct: 54 SEEDQRKGKAVDEVDIDHRLHEDEQLARALQESLNDE-PPRQNVPVKDVHSESTPATFMP 112
Query: 113 LPFMF-SSGFRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPY 171
P++F S+G R CAGC + IG GRFLSCM +VWHP+CFRC AC++PI +YEF++ +PY
Sbjct: 113 -PYIFPSTGLRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPY 171
Query: 172 HKTCYKERFHPKCDVCKQFIPTNMNGLIEYRAHPFWLQKYCPSHEVDGTPRCCSCERMEP 231
H++CYKE FHPKCDVCK FIPTN +G IEYRAHPFW+QKYCP+HE D TPRCCSCERMEP
Sbjct: 172 HRSCYKELFHPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEP 231
Query: 232 RESRYVLLDDGRKLCLECLDSAVMDTSECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQA 291
++S+Y+ LDDGRKLCLECL++++MDT ECQPLY++IQEFYEGLNMKVEQQ+PLLLVERQA
Sbjct: 232 KDSKYITLDDGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQA 291
Query: 292 LNEAMEGEKTGHHHLPETRGLCLSEEQTVSTILRRPRMA-GNKVMEMITEPYRLTRRCEV 350
LNEAME EKTGHH L ETRGLCLSEEQ V TILRRP + GNK+++MIT PY+L RRCEV
Sbjct: 292 LNEAMEAEKTGHH-LAETRGLCLSEEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEV 350
Query: 351 TAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSPDVEEGICQVLAHMWIESEIIAXX 410
TAILILYGLPRLLTGSILAHEMMHA+LRLKGY+TL P VEEGICQVLAHMW+ESEI +
Sbjct: 351 TAILILYGLPRLLTGSILAHEMMHAYLRLKGYQTLDPKVEEGICQVLAHMWLESEITSGS 410
Query: 411 XXXXXXXXXXXXXXXXXXXXXXXQ-----FERKLGDFFKHQIESDTSMAYGDGFRAGNRA 465
+ FE+KLG+FFKHQIE+D S YGDGFR G +A
Sbjct: 411 SSIIASIAASSSSSSSSSAPSSKKGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKA 470
Query: 466 VLQYGLKRTLEHIRLTGTFP 485
V +YGL++TL+H++LTG FP
Sbjct: 471 VERYGLRKTLDHMKLTGVFP 490
>Os03g0267800 LIM, zinc-binding domain containing protein
Length = 501
Score = 531 bits (1367), Expect = e-151, Method: Compositional matrix adjust.
Identities = 270/502 (53%), Positives = 341/502 (67%), Gaps = 36/502 (7%)
Query: 1 MGWLTKFFRGSTHKISEGQYHSKPA--EETIWNGPSNSAVVTDVPSEFDNEDIARAISLS 58
M WL F +G+ + + A E T+W P + P +NE++ A++L+
Sbjct: 20 MKWLCAFLKGTKDGEANRRRPRVTAGEETTLWEEPVRPK--KEEPPRHNNEEMDHALALA 77
Query: 59 LLEEEQR-KAKAIEKDMHLEEDEQLARAIQESLNVESPPRAREXXXXXXXXMYQPL---- 113
L ++ + K + +K E DE+LARAIQ+SLN+ YQP
Sbjct: 78 LADDAKNTKERNHDKG---ENDEELARAIQDSLNMNP---------------YQPYNPCA 119
Query: 114 ---PFMFSSGFRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHP 170
S G+R C GC EIGHG +LSC+G WHP+CFRC +C PI + EF++ G P
Sbjct: 120 PSQTQARSRGYRVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIREMEFTLLGTDP 179
Query: 171 YHKTCYKERFHPKCDVCKQFIPTNMNGLIEYRAHPFWLQKYCPSHEVDGTPRCCSCERME 230
YHK CYKE HPKCDVC QFIPTN GLIEYRAHPFW QKYCP HE D TPRCCSCE+ME
Sbjct: 180 YHKLCYKELHHPKCDVCLQFIPTNRTGLIEYRAHPFWGQKYCPLHEHDRTPRCCSCEKME 239
Query: 231 PRESRYVLLDDGRKLCLECLDSAVMDTSECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQ 290
PR ++Y+ L DGR LC+ECLDSA+MDT ECQPLY I+++YEG+NMK++QQ+P+LLVERQ
Sbjct: 240 PRNTKYMSLGDGRSLCMECLDSAIMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQ 299
Query: 291 ALNEAMEGEKTGHHHLPETRGLCLSEEQTVSTILRRPRMAGNKVMEMITEPYRLTRRCEV 350
ALNEAMEGE G HH+PETRGLCLSEEQTV++ILRRPR+ N++++M T+P +LTRRCEV
Sbjct: 300 ALNEAMEGESKGPHHMPETRGLCLSEEQTVTSILRRPRIGANRLLDMKTQPQKLTRRCEV 359
Query: 351 TAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSPDVEEGICQVLAHMWIESEIIAXX 410
TAIL+L+GLPRLLTGSILAHE+MH WLRLKGYR L ++EEGICQV++++W+ESEI+
Sbjct: 360 TAILVLFGLPRLLTGSILAHELMHGWLRLKGYRNLKAEIEEGICQVMSYLWLESEILPST 419
Query: 411 XXXXXXXXXXXXXXXXXXXXXXXQ------FERKLGDFFKHQIESDTSMAYGDGFRAGNR 464
+ E+KLG+FF HQI +DTS AYGDGFRA
Sbjct: 420 SRYGQASTSYASSSSSSCRPPPSKKGGISHTEKKLGEFFLHQIANDTSSAYGDGFRAAYA 479
Query: 465 AVLQYGLKRTLEHIRLTGTFPF 486
AV +YGL+++L HIRLTG FP
Sbjct: 480 AVNKYGLRQSLNHIRLTGGFPV 501
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,539,026
Number of extensions: 679000
Number of successful extensions: 1439
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1427
Number of HSP's successfully gapped: 6
Length of query: 486
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 381
Effective length of database: 11,553,331
Effective search space: 4401819111
Effective search space used: 4401819111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)