BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0172800 Os06g0172800|J065102L01
(451 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0172800 Raffinose synthase family protein 835 0.0
Os03g0808900 Similar to Seed imbibition protein (Fragment) 460 e-129
Os08g0495800 Raffinose synthase family protein 427 e-120
Os07g0209100 Similar to Seed imbibition protein (Fragment) 426 e-119
Os04g0481100 Similar to Seed imbibition protein (Fragment) 278 7e-75
>Os06g0172800 Raffinose synthase family protein
Length = 451
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/451 (93%), Positives = 422/451 (93%)
Query: 1 MTVTSSVKVAGGELSVHGRTVLSGVPEAVRXXXXXXXGPVDGVFLGGDFAEPASRHVVSL 60
MTVTSSVKVAGGELSVHGRTVLSGVPEAVR GPVDGVFLGGDFAEPASRHVVSL
Sbjct: 1 MTVTSSVKVAGGELSVHGRTVLSGVPEAVRASSAAAAGPVDGVFLGGDFAEPASRHVVSL 60
Query: 61 GAMRGVRFMACFRFKLWWMAQRMGEKGGDVPHETQFLLVESKAGVDGGGGDASYLVFLPL 120
GAMRGVRFMACFRFKLWWMAQRMGEKGGDVPHETQFLLVESKAGVDGGGGDASYLVFLPL
Sbjct: 61 GAMRGVRFMACFRFKLWWMAQRMGEKGGDVPHETQFLLVESKAGVDGGGGDASYLVFLPL 120
Query: 121 VEGAFRASLQGGGAGGDELQLCVESGDAGTRAASFDRALFVGAADSDPFXXXXXXXXXXK 180
VEGAFRASLQGGGAGGDELQLCVESGDAGTRAASFDRALFVGAADSDPF K
Sbjct: 121 VEGAFRASLQGGGAGGDELQLCVESGDAGTRAASFDRALFVGAADSDPFAAIAGAVAAAK 180
Query: 181 SCLKTFRIRAEKKLPGIVDYFGWCTWDAFYQDVTQEGVEAGLRSLTAGGAPPKFVIIDDG 240
SCLKTFRIRAEKKLPGIVDYFGWCTWDAFYQDVTQEGVEAGLRSLTAGGAPPKFVIIDDG
Sbjct: 181 SCLKTFRIRAEKKLPGIVDYFGWCTWDAFYQDVTQEGVEAGLRSLTAGGAPPKFVIIDDG 240
Query: 241 WQSVGTDHQNPDDTGADAKDKQPLLARLTGIKENSKFQDGDDPAAGIKTVVRAAKEKYGL 300
WQSVGTDHQNPDDTGADAKDKQPLLARLTGIKENSKFQDGDDPAAGIKTVVRAAKEKYGL
Sbjct: 241 WQSVGTDHQNPDDTGADAKDKQPLLARLTGIKENSKFQDGDDPAAGIKTVVRAAKEKYGL 300
Query: 301 KYVYVWHAITGYWGGVRPGVAGMEGYHSNMQFPNVSPGVVENEPGMKTDVLTTQGLGLVH 360
KYVYVWHAITGYWGGVRPGVAGMEGYHSNMQFPNVSPGVVENEPGMKTDVLTTQGLGLVH
Sbjct: 301 KYVYVWHAITGYWGGVRPGVAGMEGYHSNMQFPNVSPGVVENEPGMKTDVLTTQGLGLVH 360
Query: 361 PRAVYRFYDELHAYLXXXXXXXXXXXXQCILETLGAGHGGRVSLTRQFHQALDASIAKNF 420
PRAVYRFYDELHAYL QCILETLGAGHGGRVSLTRQFHQALDASIAKNF
Sbjct: 361 PRAVYRFYDELHAYLAAAGVDGVKVDVQCILETLGAGHGGRVSLTRQFHQALDASIAKNF 420
Query: 421 PENGIIACMSHHTDALYWYTIYINSIELSQW 451
PENGIIACMSHHTDALYWYTIYINSIELSQW
Sbjct: 421 PENGIIACMSHHTDALYWYTIYINSIELSQW 451
>Os03g0808900 Similar to Seed imbibition protein (Fragment)
Length = 505
Score = 460 bits (1183), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/449 (52%), Positives = 299/449 (66%), Gaps = 19/449 (4%)
Query: 1 MTVTSSVKVAGGELSVHGRTVLSGVPEAVRXXXXXXXGPVDGVFLGGDFAEPASRHVVSL 60
MTVT + VA G L HGRT+L+GV + + G VDG F+G EP S HV +
Sbjct: 1 MTVTPRITVAEGRLVAHGRTILTGVADNIALTHASGAGLVDGAFVGATADEPKSLHVFTF 60
Query: 61 GAMRGVRFMACFRFKLWWMAQRMGEKGGDVPHETQFLLVESKAGVDGGGGDASYLVFLPL 120
G +R +RFM CFRFKLWWM QRMG G DVP ETQF+L+ES+ G GGGG+A Y+V LPL
Sbjct: 61 GTLRDLRFMCCFRFKLWWMTQRMGTSGRDVPLETQFMLLESRDG--GGGGEAVYVVMLPL 118
Query: 121 VEGAFRASLQGGGAGGDELQLCVESGDAGTRAASFDRALFVGAADSDPFXXXXXXXXXXK 180
+EG FRA+LQG DEL++C+ESGD + A ++V A ++PF +
Sbjct: 119 LEGQFRAALQGNDR--DELEICIESGDKAVQTAQGTYMVYVHAG-ANPFDTITQAVKVVE 175
Query: 181 SCLKTFRIRAEKKLPGIVDYFGWCTWDAFYQDVTQEGVEAGLRSLTAGGAPPKFVIIDDG 240
L+TF R +KKLP +D+FGWCTWDAFY DVT +GV+ GL+SL GG PP+F+IIDDG
Sbjct: 176 RHLQTFHHREKKKLPSFLDWFGWCTWDAFYTDVTADGVKQGLQSLAEGGTPPRFLIIDDG 235
Query: 241 WQSVGTDHQNPDDTG-ADAKDKQPLLARLTGIKENSKFQ--------DGDD---PAAGIK 288
WQ +G+ +N +D G A ++ +RL GIKEN+KFQ DG + AAG+K
Sbjct: 236 WQQIGS--ENKEDAGNAVVQEGAQFASRLIGIKENTKFQKTTTTAMADGGETAASAAGLK 293
Query: 289 TVVRAAKEKYGLKYVYVWHAITGYWGGVRPGVAGMEGYHSNMQFPNVSPGVVENEPGMKT 348
+V AK+++G+KYVYVWHA+ GYWGGV+P GME Y S + FP SPGV+ N+P +
Sbjct: 294 ALVEEAKKEHGVKYVYVWHAMAGYWGGVKPAAEGMEHYESAVAFPVQSPGVMGNQPDIVM 353
Query: 349 DVLTTQGLGLVHPRAVYRFYDELHAYLXXXXXXXXXXXXQCILETLGAGHGGRVSLTRQF 408
D L+ GLGLVHPR FY ELHAYL Q I+ETLGAGHGGRVSLTR F
Sbjct: 354 DSLSVLGLGLVHPRMALAFYGELHAYLASCGVDGVKVDAQNIIETLGAGHGGRVSLTRAF 413
Query: 409 HQALDASIAKNFPENGIIACMSHHTDALY 437
H+AL+AS+A++FP+NG I+CM H+TD LY
Sbjct: 414 HRALEASVARSFPDNGCISCMCHNTDMLY 442
>Os08g0495800 Raffinose synthase family protein
Length = 712
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/448 (51%), Positives = 280/448 (62%), Gaps = 17/448 (3%)
Query: 1 MTVTSSVKVAGGELSVHGRTVLSGVPEAVRXXXXXXXGPVDGVFLGGDFAEPASRHVVSL 60
MTV + V V G L G TVL+ V + V G G F+G A SR V +
Sbjct: 1 MTVGAGVAVQDGGLVALGATVLTEVRDNVLLTPAAGAGMTSGTFVGVRSATAGSRSVFPV 60
Query: 61 GAMRGVRFMACFRFKLWWMAQRMGEKGGDVPHETQFLLVESK----AGVDGGGGDASYLV 116
G +RG+RF+ FRFK+WWM QRMG G D+P ETQFLLVE+ + + G G A Y V
Sbjct: 61 GKLRGLRFICTFRFKMWWMTQRMGTSGRDIPFETQFLLVEAADADGSHLAGDGAAAVYTV 120
Query: 117 FLPLVEGAFRASLQGGGAGGDELQLCVESGDAGTRAASFDRALFVGAADSDPFXXXXXXX 176
FLP++EG FRA LQG DEL++C+ESGD + +FVGA SDPF
Sbjct: 121 FLPILEGPFRAVLQGNS--DDELEICLESGDPAVESFEGTHLVFVGAG-SDPFEVITNSV 177
Query: 177 XXXKSCLKTFRIRAEKKLPGIVDYFGWCTWDAFYQDVTQEGVEAGLRSLTAGGAPPKFVI 236
+ L+TF R +KK+P ++++FGWCTWDAFY DVT EGV GL+SL GG PKFVI
Sbjct: 178 KAVERHLQTFTHREKKKMPDMLNWFGWCTWDAFYTDVTSEGVMEGLQSLGKGGTGPKFVI 237
Query: 237 IDDGWQSVGTDHQNPDDTGADAKDKQPLLARLTGIKENSKFQDG-------DDPAAGIKT 289
IDDGWQSV D P + A + RLT IKEN KFQ ++PA G+
Sbjct: 238 IDDGWQSVSMD---PAGIASLADNSANFANRLTHIKENHKFQLNGRKGHREENPANGLAH 294
Query: 290 VVRAAKEKYGLKYVYVWHAITGYWGGVRPGVAGMEGYHSNMQFPNVSPGVVENEPGMKTD 349
+V K K+ LKYVYVWHAITGYWGGVRPG GME Y S MQ+P SPGV +NEP +
Sbjct: 295 IVNEIKGKHQLKYVYVWHAITGYWGGVRPGADGMEHYESKMQYPVSSPGVQKNEPCDALN 354
Query: 350 VLTTQGLGLVHPRAVYRFYDELHAYLXXXXXXXXXXXXQCILETLGAGHGGRVSLTRQFH 409
+TT GLGLV+P V+ FY+ELHAYL Q ILETLGAGHGGRV L R++H
Sbjct: 355 SITTNGLGLVNPDRVFSFYNELHAYLASAGIDGVKVDVQNILETLGAGHGGRVLLARKYH 414
Query: 410 QALDASIAKNFPENGIIACMSHHTDALY 437
QAL+ASIA+NF +NGII CMSH+TD LY
Sbjct: 415 QALEASIARNFRDNGIICCMSHNTDNLY 442
>Os07g0209100 Similar to Seed imbibition protein (Fragment)
Length = 763
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/448 (49%), Positives = 289/448 (64%), Gaps = 15/448 (3%)
Query: 1 MTVTSSVKVAGGELSVHGRTVLSGVPEAVRXXXXXXXGPVDGVFLGGDFAEPASRHVVSL 60
MTVT + V+ G L+V GRTVL+GVPE V G VDG F+G D E S HV +
Sbjct: 1 MTVTPQITVSDGRLAVRGRTVLTGVPENVTAAHASGAGLVDGAFVGADAGEAKSHHVFTF 60
Query: 61 GAMRGVRFMACFRFKLWWMAQRMGEKGGDVPHETQFLLVESKAGV------DGGGGDASY 114
G +R RFM FRFKLWWM QRMG G DVP ETQF+L+E A GG G+ +
Sbjct: 61 GTLRECRFMCLFRFKLWWMTQRMGSSGRDVPLETQFMLIEVPATAAGDGHDGGGDGEPVF 120
Query: 115 LVFLPLVEGAFRASLQGGGAGGDELQLCVESGDAGTRAASFDRALFVGAADSDPFXXXXX 174
+V LPL+EG FRA+LQG DELQ+C+ESGD + +++ A ++PF
Sbjct: 121 VVMLPLLEGKFRAALQGND--DDELQICIESGDKAVQTEQGVNMVYIHAG-TNPFDTITQ 177
Query: 175 XXXXXKSCLKTFRIRAEKKLPGIVDYFGWCTWDAFYQDVTQEGVEAGLRSLTAGGAPPKF 234
+ ++TF R +KK+P +D+FGWCTWDAFY DVT +GV+ GLRSL GGAPP+F
Sbjct: 178 AIKAVEKRMQTFHHRDKKKMPSFLDWFGWCTWDAFYTDVTADGVKQGLRSLANGGAPPRF 237
Query: 235 VIIDDGWQSVGTDHQNPDDTGADA-KDKQPLLARLTGIKENSKFQDGD----DPAAGIKT 289
+IIDDGWQ +GT+ + D+ A A ++ +RLTGIKEN KFQ + + G++
Sbjct: 238 LIIDDGWQQIGTEDDDTDEHPAVAVQEGAQFASRLTGIKENVKFQSKNGGAGEDTPGLRM 297
Query: 290 VVRAAKEKYGLKYVYVWHAITGYWGGVRPGVAGMEGYHSNMQFPNVSPGVVENEPGMKTD 349
+V K ++G++ VYVWHA+ GYWGGV P A ME Y + + +P SPGV N+P + D
Sbjct: 298 LVEEVKGEHGVRQVYVWHAMAGYWGGVAPAPA-MERYEAALAYPVQSPGVTANQPDIVMD 356
Query: 350 VLTTQGLGLVHPRAVYRFYDELHAYLXXXXXXXXXXXXQCILETLGAGHGGRVSLTRQFH 409
L+ GLGLVHPR V FYDELHAYL Q I+ETLGAGHGGRV+LTR ++
Sbjct: 357 SLSVLGLGLVHPRKVLDFYDELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVALTRAYN 416
Query: 410 QALDASIAKNFPENGIIACMSHHTDALY 437
+AL+AS+A++FP+NG I+CM H+TD LY
Sbjct: 417 RALEASVARSFPDNGCISCMCHNTDMLY 444
>Os04g0481100 Similar to Seed imbibition protein (Fragment)
Length = 663
Score = 278 bits (711), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 210/360 (58%), Gaps = 14/360 (3%)
Query: 79 MAQRMGEKGGDVPHETQFLLVESKAGVDGGGGDASYLVFLPLVEGAFRASLQGGGAGGDE 138
M +GE VP ETQ LL+ES++ G A Y + LP+++G FRASLQG + +E
Sbjct: 1 MIPTVGEDAAGVPAETQMLLLESRSE----AGAALYALMLPVLDGGFRASLQG--SPENE 54
Query: 139 LQLCVESGDAGTRAASFDRALFVGAADSDPFXXXXXXXXXXKSCLKTFRIRAEKKLPGIV 198
LQ C ESGD + A+F+ + D +PF TF +K++P +
Sbjct: 55 LQFCFESGDPEVQTLEAVDAVFINSGD-NPFKLMKESIKMLSKIKGTFSHIEDKEIPANL 113
Query: 199 DYFGWCTWDAFYQDVTQEGVEAGLRSLTAGGAPPKFVIIDDGWQSVGTDHQNPDDTGADA 258
D+FGWCTWDAFY+ V G+E GL+SL GGAPP+F+IIDDGWQ + D+ A
Sbjct: 114 DWFGWCTWDAFYKSVNPVGIEEGLKSLCEGGAPPRFLIIDDGWQETVNGFKEVDE----A 169
Query: 259 KDKQPLLA-RLTGIKENSKFQDGDDPAAGIKTVVRAAKEKYGLKYVYVWHAITGYWGGVR 317
+Q + A RL + EN KF+ + + V+ KE YG+KYVY+WHA+ GYWGGV
Sbjct: 170 FIEQTVFAERLIDLTENDKFRG--ETCKNLGDHVKKIKEHYGVKYVYIWHALHGYWGGVL 227
Query: 318 PGVAGMEGYHSNMQFPNVSPGVVENEPGMKTDVLTTQGLGLVHPRAVYRFYDELHAYLXX 377
M+ Y+ + +P SPG V N + D L G+G++ P +Y FY++ H+YL
Sbjct: 228 TTPDAMKKYNPQLVYPVQSPGNVANLRDIAMDSLEKFGVGIIDPAMIYDFYNDQHSYLSS 287
Query: 378 XXXXXXXXXXQCILETLGAGHGGRVSLTRQFHQALDASIAKNFPENGIIACMSHHTDALY 437
Q ++ETLG G GGRV+LT+++ QAL+ SIA+NF N +I CMSH+TD+++
Sbjct: 288 VGVDGVKVDVQNVMETLGKGFGGRVALTQKYQQALEESIARNFKGNNLICCMSHNTDSIF 347
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,529,881
Number of extensions: 774828
Number of successful extensions: 2107
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2087
Number of HSP's successfully gapped: 5
Length of query: 451
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 347
Effective length of database: 11,605,545
Effective search space: 4027124115
Effective search space used: 4027124115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)