FiT-DB / Search/ Help/ Sample detail

Os08g0495800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Raffinose synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.84 (0.0585) R2 : 0.627
β1 : 2.88 (0.229) R2dD : 0.155 R2D : -0.0205
β2 : 6.21 (0.37) R2dC : 1.62 R2C : -0.131
β3 : -4.64 (0.46) R2dE : 0.581 R2E : -1.31
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.5 (0.79) R2dD*E : 0.228 R2D*E : 0.114
γ1 : 0.77 (0.128) R2dN8 : 0.0427 R2N8 : -0.0278
σ : 1.08
deviance : 538.26
__
_____
C
peak time of C : 21.9
E
wheather : temperature
threshold : 8.827
memory length : 747
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 9.48

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
539.19 1.09 8.85 2.85 6.18 -4.62 0.0524 12.4 0.759 21.8 9.34 740 12.1 9.58
601.51 1.14 9.09 2.08 5.25 -3.56 7.2 -- 0.24 21.8 13.13 581 13.9 9.57
538.26 1.08 8.84 2.88 6.21 -4.64 -- 12.5 0.77 21.9 8.827 747 12.1 9.48
820.3 1.33 8.98 1.79 5.91 -3.8 -- -- 0.471 22 4.401 719 13.3 7.89
1305.52 1.69 8.89 1.42 -- 1.25 -- 1.78 0.138 -- 8.827 747 12.1 9.48
684.03 1.23 8.95 1.6 3.01 -- 7.21 -- 0.264 21.4 -- -- -- --
862.46 1.38 8.95 1.35 3.06 -- -- -- 0.266 20.8 -- -- -- --
890.5 1.39 8.86 1.41 -- 3.12 -- -- 0.283 -- -27.11 434 12.2 10.9
887.65 1.39 9.03 -- 5.52 -3.11 -- -- 0.184 21.9 -0.2431 718 13.3 7.75
1394.25 1.74 8.87 1.35 -- -- -- -- 0.244 -- -- -- -- --
910.85 1.41 8.99 -- 3.05 -- -- -- 0.115 20.9 -- -- -- --
910.52 1.41 8.95 -- -- 3.21 -- -- -0.0797 -- -125.1 527 11.9 9.32
1442.56 1.77 8.9 -- -- -- -- -- 0.0937 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 542.18 temperature 10.0 720 > th dose dependent rect. 12 10
21 561.14 humidity 70.0 720 > th dose dependent rect. 12 6
24 561.68 humidity 90.0 720 < th dose independent rect. 13 8
26 563.29 temperature 10.0 30 > th dose dependent sin 13 NA
33 564.23 humidity 50.0 720 > th dose dependent rect. 11 7
35 564.60 radiation 10.0 720 < th dose independent rect. 15 10
45 565.48 radiation 20.0 720 < th dose dependent rect. 15 10
53 566.44 temperature 10.0 270 > th dose dependent sin 15 NA
111 571.68 humidity 90.0 720 < th dose dependent rect. 13 14
116 571.79 humidity 80.0 720 > th dose independent rect. 12 6
117 571.88 humidity 90.0 720 < th dose dependent rect. 13 17
133 572.79 precipitation 0.1 720 < th dose independent sin 20 NA
135 572.79 precipitation 0.1 720 < th dose dependent sin 20 NA
151 573.32 humidity 50.0 720 > th dose dependent rect. 8 11
213 575.63 temperature 20.0 90 > th dose dependent rect. 7 5
223 576.07 humidity 90.0 720 < th dose dependent sin 15 NA
237 576.86 radiation 40.0 720 < th dose dependent rect. 13 6
265 577.64 humidity 50.0 720 > th dose dependent sin 23 NA
269 577.85 temperature 10.0 270 > th dose dependent rect. 5 7
285 578.39 humidity 80.0 720 < th dose independent sin 17 NA
287 578.39 temperature 20.0 270 > th dose dependent rect. 8 1
292 578.49 temperature 25.0 270 < th dose independent rect. 24 13
321 579.51 temperature 25.0 270 < th dose independent rect. 24 11
325 579.55 temperature 10.0 270 > th dose dependent rect. 14 14
330 579.64 temperature 10.0 720 > th dose dependent sin 18 NA
333 579.71 temperature 15.0 270 > th dose independent rect. 12 18
358 580.52 radiation 10.0 720 < th dose independent sin 16 NA
367 580.69 radiation 10.0 720 < th dose independent rect. 15 4
386 581.00 temperature 20.0 720 > th dose independent rect. 12 8
397 581.25 radiation 40.0 720 < th dose dependent sin 15 NA
399 581.29 temperature 20.0 270 > th dose dependent rect. 7 3
409 581.48 temperature 15.0 270 > th dose independent rect. 13 16
462 582.82 temperature 25.0 90 > th dose independent rect. 7 5
531 584.30 humidity 50.0 720 > th dose dependent rect. 23 19
543 584.52 humidity 60.0 270 > th dose dependent rect. 13 18
568 585.13 radiation 30.0 720 < th dose independent rect. 14 9
574 585.25 radiation 1.0 90 > th dose independent rect. 9 22
582 585.41 humidity 80.0 720 > th dose independent rect. 4 15
588 585.49 humidity 80.0 720 > th dose independent rect. 6 13
600 585.70 radiation 10.0 720 < th dose independent rect. 15 14
609 585.88 radiation 40.0 720 < th dose dependent rect. 13 16
623 586.15 radiation 30.0 720 < th dose independent rect. 13 6
631 586.36 radiation 20.0 720 < th dose dependent rect. 15 4
691 587.21 temperature 30.0 720 < th dose dependent rect. 11 7
743 587.89 temperature 30.0 720 < th dose dependent rect. 12 5
762 588.15 humidity 70.0 720 > th dose independent rect. 7 11
782 588.52 temperature 15.0 10 > th dose dependent rect. 17 14
824 589.02 radiation 30.0 720 < th dose independent rect. 13 16
825 589.03 temperature 30.0 720 < th dose dependent rect. 13 2
854 589.33 temperature 15.0 90 > th dose independent rect. 15 16
938 590.44 temperature 15.0 90 > th dose dependent rect. 21 10
941 590.47 humidity 80.0 720 > th dose independent rect. 17 1
953 590.58 temperature 30.0 720 < th dose independent rect. 12 17
956 590.63 humidity 60.0 720 > th dose dependent rect. 13 11