Os03g0808900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Seed imbibition protein (Fragment).
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Os03g0808900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Seed imbibition protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.09 | 0.523 | 11.2 | -1.17 | 2.43 | 2.15 | -0.815 | -4.29 | -0.138 | 17.6 | 24.69 | 909 | -- | -- |
| 130.24 | 0.532 | 11.1 | -0.299 | 2.46 | 1.76 | -0.928 | -- | 0.0929 | 17.7 | 24.82 | 914 | -- | -- |
| 125.61 | 0.522 | 11.2 | -1.23 | 2.45 | 2.15 | -- | -4.52 | -0.161 | 17.7 | 24.67 | 920 | -- | -- |
| 132.23 | 0.536 | 11.1 | -0.302 | 2.6 | 1.61 | -- | -- | 0.0981 | 17.8 | 25 | 984 | -- | -- |
| 257.21 | 0.747 | 11.2 | -1.62 | -- | 3.93 | -- | -6.7 | -0.403 | -- | 24.11 | 523 | -- | -- |
| 201.64 | 0.666 | 11 | 0.113 | 2.77 | -- | -0.68 | -- | 0.247 | 18.3 | -- | -- | -- | -- |
| 202.77 | 0.667 | 11 | 0.121 | 2.76 | -- | -- | -- | 0.245 | 18.3 | -- | -- | -- | -- |
| 287.23 | 0.789 | 11.1 | -0.572 | -- | 3.27 | -- | -- | -0.153 | -- | 24.2 | 512 | -- | -- |
| 134.51 | 0.54 | 11.1 | -- | 2.61 | 1.54 | -- | -- | 0.145 | 17.8 | 25.13 | 985 | -- | -- |
| 599.6 | 1.14 | 11 | 0.0481 | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
| 203.15 | 0.667 | 11.1 | -- | 2.76 | -- | -- | -- | 0.231 | 18.3 | -- | -- | -- | -- |
| 295.26 | 0.8 | 11.1 | -- | -- | 3.2 | -- | -- | -0.0715 | -- | 24.25 | 509 | -- | -- |
| 599.66 | 1.14 | 11 | -- | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.83 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 2 | 122.67 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 4 | 124.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 6 | 124.08 | temperature | 25 | 720 | > th | dose dependent | sin | 17 | NA |
| 8 | 124.25 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 10 | 124.35 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 14 | 124.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 21 | 124.76 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 29 | 125.32 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 85 | 127.65 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 16 |
| 91 | 127.76 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 18 |
| 118 | 128.73 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 21 |
| 142 | 129.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 145 | 129.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 246 | 130.49 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 248 | 130.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 292 | 130.95 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 21 |
| 296 | 131.00 | radiation | 1 | 720 | > th | dose independent | sin | 23 | NA |
| 300 | 131.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 324 | 131.26 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 354 | 131.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 355 | 131.71 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 23 |
| 394 | 132.05 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 23 |
| 407 | 132.18 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 485 | 132.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 541 | 132.92 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 16 |
| 594 | 133.23 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 12 |
| 624 | 133.47 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 645 | 133.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 652 | 133.56 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 718 | 133.68 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 751 | 134.05 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 8 |
| 775 | 134.22 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 814 | 134.60 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 7 |
| 817 | 134.61 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 878 | 135.16 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 913 | 135.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 914 | 135.45 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 935 | 135.51 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 962 | 135.70 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 975 | 135.77 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |