BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0808900 Os03g0808900|AK065100
(505 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0808900 Similar to Seed imbibition protein (Fragment) 1035 0.0
Os07g0209100 Similar to Seed imbibition protein (Fragment) 790 0.0
Os08g0495800 Raffinose synthase family protein 635 0.0
Os06g0172800 Raffinose synthase family protein 466 e-131
Os04g0481100 Similar to Seed imbibition protein (Fragment) 404 e-112
>Os03g0808900 Similar to Seed imbibition protein (Fragment)
Length = 505
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/505 (98%), Positives = 498/505 (98%)
Query: 1 MTVTPRITVAEGRLVAHGRTILTGVADNIALTHASGAGLVDGAFVGATADEPKSLHVFTF 60
MTVTPRITVAEGRLVAHGRTILTGVADNIALTHASGAGLVDGAFVGATADEPKSLHVFTF
Sbjct: 1 MTVTPRITVAEGRLVAHGRTILTGVADNIALTHASGAGLVDGAFVGATADEPKSLHVFTF 60
Query: 61 GTLRDLRFMCCFRFKLWWMTQRMGTSGRDVPLETQFMLLESRDGGGGGEAVYVVMLPLLE 120
GTLRDLRFMCCFRFKLWWMTQRMGTSGRDVPLETQFMLLESRDGGGGGEAVYVVMLPLLE
Sbjct: 61 GTLRDLRFMCCFRFKLWWMTQRMGTSGRDVPLETQFMLLESRDGGGGGEAVYVVMLPLLE 120
Query: 121 GQFRAALQGNDRDELEICIESGDKAVQTAQGTYMVYVHAGANPFDTITQAVKVVERHLQT 180
GQFRAALQGNDRDELEICIESGDKAVQTAQGTYMVYVHAGANPFDTITQAVKVVERHLQT
Sbjct: 121 GQFRAALQGNDRDELEICIESGDKAVQTAQGTYMVYVHAGANPFDTITQAVKVVERHLQT 180
Query: 181 FHHREKKKLPSFLDWFGWCTWDAFYTDVTADGVKQGLQSLAEGGTPPRFLIIDDGWQQIG 240
FHHREKKKLPSFLDWFGWCTWDAFYTDVTADGVKQGLQSLAEGGTPPRFLIIDDGWQQIG
Sbjct: 181 FHHREKKKLPSFLDWFGWCTWDAFYTDVTADGVKQGLQSLAEGGTPPRFLIIDDGWQQIG 240
Query: 241 SENKEDAGNAVVQEGAQFASRLIGIKENTKFQKTTTTAMADGGETAASAAGLKALVEEAK 300
SENKEDAGNAVVQEGAQFASRLIGIKENTKFQKTTTTAMADGGETAASAAGLKALVEEAK
Sbjct: 241 SENKEDAGNAVVQEGAQFASRLIGIKENTKFQKTTTTAMADGGETAASAAGLKALVEEAK 300
Query: 301 KEHGVKYVYVWHAMAGYWGGVKPAAEGMEHYESAVAFPVQSPGVMGNQPDIVMDSLSVLG 360
KEHGVKYVYVWHAMAGYWGGVKPAAEGMEHYESAVAFPVQSPGVMGNQPDIVMDSLSVLG
Sbjct: 301 KEHGVKYVYVWHAMAGYWGGVKPAAEGMEHYESAVAFPVQSPGVMGNQPDIVMDSLSVLG 360
Query: 361 LGLVHPRMALAFYGELHAYLASCGVDGVKVDAQNIIETLGAGHGGRVSLTRAFHRALEAS 420
LGLVHPRMALAFYGELHAYLASCGVDGVKVDAQNIIETLGAGHGGRVSLTRAFHRALEAS
Sbjct: 361 LGLVHPRMALAFYGELHAYLASCGVDGVKVDAQNIIETLGAGHGGRVSLTRAFHRALEAS 420
Query: 421 VARSFPDNGCISCMCHNTDMLYSARQTAVVRASDDFYPLDPASHTIHISSVAYNTLFLGE 480
VARSFPDNGCISCMCHNTDMLYSARQTAVVRASDDFYPLDPASHTIHISSVAYNTLFLGE
Sbjct: 421 VARSFPDNGCISCMCHNTDMLYSARQTAVVRASDDFYPLDPASHTIHISSVAYNTLFLGE 480
Query: 481 FMQPDWDMFHVYASSPXXXXXXXCS 505
FMQPDWDMFHVYASSP CS
Sbjct: 481 FMQPDWDMFHVYASSPLLLNLLLCS 505
>Os07g0209100 Similar to Seed imbibition protein (Fragment)
Length = 763
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/500 (78%), Positives = 425/500 (85%), Gaps = 18/500 (3%)
Query: 1 MTVTPRITVAEGRLVAHGRTILTGVADNIALTHASGAGLVDGAFVGATADEPKSLHVFTF 60
MTVTP+ITV++GRL GRT+LTGV +N+ HASGAGLVDGAFVGA A E KS HVFTF
Sbjct: 1 MTVTPQITVSDGRLAVRGRTVLTGVPENVTAAHASGAGLVDGAFVGADAGEAKSHHVFTF 60
Query: 61 GTLRDLRFMCCFRFKLWWMTQRMGTSGRDVPLETQFMLLE--------SRDGGGGGEAVY 112
GTLR+ RFMC FRFKLWWMTQRMG+SGRDVPLETQFML+E DGGG GE V+
Sbjct: 61 GTLRECRFMCLFRFKLWWMTQRMGSSGRDVPLETQFMLIEVPATAAGDGHDGGGDGEPVF 120
Query: 113 VVMLPLLEGQFRAALQGNDRDELEICIESGDKAVQTAQGTYMVYVHAGANPFDTITQAVK 172
VVMLPLLEG+FRAALQGND DEL+ICIESGDKAVQT QG MVY+HAG NPFDTITQA+K
Sbjct: 121 VVMLPLLEGKFRAALQGNDDDELQICIESGDKAVQTEQGVNMVYIHAGTNPFDTITQAIK 180
Query: 173 VVERHLQTFHHREKKKLPSFLDWFGWCTWDAFYTDVTADGVKQGLQSLAEGGTPPRFLII 232
VE+ +QTFHHR+KKK+PSFLDWFGWCTWDAFYTDVTADGVKQGL+SLA GG PPRFLII
Sbjct: 181 AVEKRMQTFHHRDKKKMPSFLDWFGWCTWDAFYTDVTADGVKQGLRSLANGGAPPRFLII 240
Query: 233 DDGWQQIGSENKE-DAGNAV-VQEGAQFASRLIGIKENTKFQKTTTTAMADGGETAASAA 290
DDGWQQIG+E+ + D AV VQEGAQFASRL GIKEN KFQ A D
Sbjct: 241 DDGWQQIGTEDDDTDEHPAVAVQEGAQFASRLTGIKENVKFQSKNGGAGED-------TP 293
Query: 291 GLKALVEEAKKEHGVKYVYVWHAMAGYWGGVKPAAEGMEHYESAVAFPVQSPGVMGNQPD 350
GL+ LVEE K EHGV+ VYVWHAMAGYWGGV PA ME YE+A+A+PVQSPGV NQPD
Sbjct: 294 GLRMLVEEVKGEHGVRQVYVWHAMAGYWGGVAPAP-AMERYEAALAYPVQSPGVTANQPD 352
Query: 351 IVMDSLSVLGLGLVHPRMALAFYGELHAYLASCGVDGVKVDAQNIIETLGAGHGGRVSLT 410
IVMDSLSVLGLGLVHPR L FY ELHAYLASCGVDGVKVD QNIIETLGAGHGGRV+LT
Sbjct: 353 IVMDSLSVLGLGLVHPRKVLDFYDELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVALT 412
Query: 411 RAFHRALEASVARSFPDNGCISCMCHNTDMLYSARQTAVVRASDDFYPLDPASHTIHISS 470
RA++RALEASVARSFPDNGCISCMCHNTDMLYSARQTAVVRASDDFYP DPASHTIH++S
Sbjct: 413 RAYNRALEASVARSFPDNGCISCMCHNTDMLYSARQTAVVRASDDFYPRDPASHTIHVAS 472
Query: 471 VAYNTLFLGEFMQPDWDMFH 490
VAYNT+FLGEFMQPDWDMFH
Sbjct: 473 VAYNTVFLGEFMQPDWDMFH 492
>Os08g0495800 Raffinose synthase family protein
Length = 712
Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/497 (61%), Positives = 373/497 (75%), Gaps = 14/497 (2%)
Query: 1 MTVTPRITVAEGRLVAHGRTILTGVADNIALTHASGAGLVDGAFVGATADEPKSLHVFTF 60
MTV + V +G LVA G T+LT V DN+ LT A+GAG+ G FVG + S VF
Sbjct: 1 MTVGAGVAVQDGGLVALGATVLTEVRDNVLLTPAAGAGMTSGTFVGVRSATAGSRSVFPV 60
Query: 61 GTLRDLRFMCCFRFKLWWMTQRMGTSGRDVPLETQFMLLESRDGGG------GGEAVYVV 114
G LR LRF+C FRFK+WWMTQRMGTSGRD+P ETQF+L+E+ D G G AVY V
Sbjct: 61 GKLRGLRFICTFRFKMWWMTQRMGTSGRDIPFETQFLLVEAADADGSHLAGDGAAAVYTV 120
Query: 115 MLPLLEGQFRAALQGNDRDELEICIESGDKAVQTAQGTYMVYVHAGANPFDTITQAVKVV 174
LP+LEG FRA LQGN DELEIC+ESGD AV++ +GT++V+V AG++PF+ IT +VK V
Sbjct: 121 FLPILEGPFRAVLQGNSDDELEICLESGDPAVESFEGTHLVFVGAGSDPFEVITNSVKAV 180
Query: 175 ERHLQTFHHREKKKLPSFLDWFGWCTWDAFYTDVTADGVKQGLQSLAEGGTPPRFLIIDD 234
ERHLQTF HREKKK+P L+WFGWCTWDAFYTDVT++GV +GLQSL +GGT P+F+IIDD
Sbjct: 181 ERHLQTFTHREKKKMPDMLNWFGWCTWDAFYTDVTSEGVMEGLQSLGKGGTGPKFVIIDD 240
Query: 235 GWQQIGSENKEDAGNA-VVQEGAQFASRLIGIKENTKFQKTTTTAMADGGETAASAAGLK 293
GWQ + + + AG A + A FA+RL IKEN KFQ G A GL
Sbjct: 241 GWQSV---SMDPAGIASLADNSANFANRLTHIKENHKFQLNGRK----GHREENPANGLA 293
Query: 294 ALVEEAKKEHGVKYVYVWHAMAGYWGGVKPAAEGMEHYESAVAFPVQSPGVMGNQPDIVM 353
+V E K +H +KYVYVWHA+ GYWGGV+P A+GMEHYES + +PV SPGV N+P +
Sbjct: 294 HIVNEIKGKHQLKYVYVWHAITGYWGGVRPGADGMEHYESKMQYPVSSPGVQKNEPCDAL 353
Query: 354 DSLSVLGLGLVHPRMALAFYGELHAYLASCGVDGVKVDAQNIIETLGAGHGGRVSLTRAF 413
+S++ GLGLV+P +FY ELHAYLAS G+DGVKVD QNI+ETLGAGHGGRV L R +
Sbjct: 354 NSITTNGLGLVNPDRVFSFYNELHAYLASAGIDGVKVDVQNILETLGAGHGGRVLLARKY 413
Query: 414 HRALEASVARSFPDNGCISCMCHNTDMLYSARQTAVVRASDDFYPLDPASHTIHISSVAY 473
H+ALEAS+AR+F DNG I CM HNTD LYS++++AVVRASDDF+P DPASHTIHI+SVAY
Sbjct: 414 HQALEASIARNFRDNGIICCMSHNTDNLYSSKRSAVVRASDDFWPRDPASHTIHIASVAY 473
Query: 474 NTLFLGEFMQPDWDMFH 490
NT+FLGEFMQPDWDMFH
Sbjct: 474 NTVFLGEFMQPDWDMFH 490
>Os06g0172800 Raffinose synthase family protein
Length = 451
Score = 466 bits (1200), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/449 (54%), Positives = 312/449 (69%), Gaps = 19/449 (4%)
Query: 1 MTVTPRITVAEGRLVAHGRTILTGVADNIALTHASGAGLVDGAFVGATADEPKSLHVFTF 60
MTVT + VA G L HGRT+L+GV + + + A+ AG VDG F+G EP S HV +
Sbjct: 1 MTVTSSVKVAGGELSVHGRTVLSGVPEAVRASSAAAAGPVDGVFLGGDFAEPASRHVVSL 60
Query: 61 GTLRDLRFMCCFRFKLWWMTQRMGTSGRDVPLETQFMLLESRDGGGGGEAV--YVVMLPL 118
G +R +RFM CFRFKLWWM QRMG G DVP ETQF+L+ES+ G GG Y+V LPL
Sbjct: 61 GAMRGVRFMACFRFKLWWMAQRMGEKGGDVPHETQFLLVESKAGVDGGGGDASYLVFLPL 120
Query: 119 LEGQFRAALQGNDR--DELEICIESGDKAVQTAQGTYMVYVHAG-ANPFDTITQAVKVVE 175
+EG FRA+LQG DEL++C+ESGD + A ++V A ++PF I AV +
Sbjct: 121 VEGAFRASLQGGGAGGDELQLCVESGDAGTRAASFDRALFVGAADSDPFAAIAGAVAAAK 180
Query: 176 RHLQTFHHREKKKLPSFLDWFGWCTWDAFYTDVTADGVKQGLQSLAEGGTPPRFLIIDDG 235
L+TF R +KKLP +D+FGWCTWDAFY DVT +GV+ GL+SL GG PP+F+IIDDG
Sbjct: 181 SCLKTFRIRAEKKLPGIVDYFGWCTWDAFYQDVTQEGVEAGLRSLTAGGAPPKFVIIDDG 240
Query: 236 WQQIGS--ENKEDAGNAVVQEGAQFASRLIGIKENTKFQKTTTTAMADGGETAASAAGLK 293
WQ +G+ +N +D G A ++ +RL GIKEN+KFQ DG + AAG+K
Sbjct: 241 WQSVGTDHQNPDDTG-ADAKDKQPLLARLTGIKENSKFQ--------DGDD---PAAGIK 288
Query: 294 ALVEEAKKEHGVKYVYVWHAMAGYWGGVKPAAEGMEHYESAVAFPVQSPGVMGNQPDIVM 353
+V AK+++G+KYVYVWHA+ GYWGGV+P GME Y S + FP SPGV+ N+P +
Sbjct: 289 TVVRAAKEKYGLKYVYVWHAITGYWGGVRPGVAGMEGYHSNMQFPNVSPGVVENEPGMKT 348
Query: 354 DSLSVLGLGLVHPRMALAFYGELHAYLASCGVDGVKVDAQNIIETLGAGHGGRVSLTRAF 413
D L+ GLGLVHPR FY ELHAYLA+ GVDGVKVD Q I+ETLGAGHGGRVSLTR F
Sbjct: 349 DVLTTQGLGLVHPRAVYRFYDELHAYLAAAGVDGVKVDVQCILETLGAGHGGRVSLTRQF 408
Query: 414 HRALEASVARSFPDNGCISCMCHNTDMLY 442
H+AL+AS+A++FP+NG I+CM H+TD LY
Sbjct: 409 HQALDASIAKNFPENGIIACMSHHTDALY 437
>Os04g0481100 Similar to Seed imbibition protein (Fragment)
Length = 663
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/412 (48%), Positives = 275/412 (66%), Gaps = 17/412 (4%)
Query: 79 MTQRMGTSGRDVPLETQFMLLESRDGGGGGEAVYVVMLPLLEGQFRAALQGNDRDELEIC 138
M +G VP ETQ +LLESR G A+Y +MLP+L+G FRA+LQG+ +EL+ C
Sbjct: 1 MIPTVGEDAAGVPAETQMLLLESRSEAGA--ALYALMLPVLDGGFRASLQGSPENELQFC 58
Query: 139 IESGDKAVQTAQGTYMVYVHAGANPFDTITQAVKVVERHLQTFHHREKKKLPSFLDWFGW 198
ESGD VQT + V++++G NPF + +++K++ + TF H E K++P+ LDWFGW
Sbjct: 59 FESGDPEVQTLEAVDAVFINSGDNPFKLMKESIKMLSKIKGTFSHIEDKEIPANLDWFGW 118
Query: 199 CTWDAFYTDVTADGVKQGLQSLAEGGTPPRFLIIDDGWQQIGSENKEDAGNAVVQEGAQF 258
CTWDAFY V G+++GL+SL EGG PPRFLIIDDGWQ+ + KE A +++ F
Sbjct: 119 CTWDAFYKSVNPVGIEEGLKSLCEGGAPPRFLIIDDGWQETVNGFKE-VDEAFIEQTV-F 176
Query: 259 ASRLIGIKENTKFQKTTTTAMADGGETAASAAGLKALVEEAKKEHGVKYVYVWHAMAGYW 318
A RLI + EN KF+ T + D V++ K+ +GVKYVY+WHA+ GYW
Sbjct: 177 AERLIDLTENDKFRGETCKNLGDH-------------VKKIKEHYGVKYVYIWHALHGYW 223
Query: 319 GGVKPAAEGMEHYESAVAFPVQSPGVMGNQPDIVMDSLSVLGLGLVHPRMALAFYGELHA 378
GGV + M+ Y + +PVQSPG + N DI MDSL G+G++ P M FY + H+
Sbjct: 224 GGVLTTPDAMKKYNPQLVYPVQSPGNVANLRDIAMDSLEKFGVGIIDPAMIYDFYNDQHS 283
Query: 379 YLASCGVDGVKVDAQNIIETLGAGHGGRVSLTRAFHRALEASVARSFPDNGCISCMCHNT 438
YL+S GVDGVKVD QN++ETLG G GGRV+LT+ + +ALE S+AR+F N I CM HNT
Sbjct: 284 YLSSVGVDGVKVDVQNVMETLGKGFGGRVALTQKYQQALEESIARNFKGNNLICCMSHNT 343
Query: 439 DMLYSARQTAVVRASDDFYPLDPASHTIHISSVAYNTLFLGEFMQPDWDMFH 490
D ++S+ ++AV RAS+DF P +P T+HI++VA+N+L LGE PDWDMFH
Sbjct: 344 DSIFSSLKSAVARASEDFMPREPTMQTLHIATVAFNSLLLGEIFIPDWDMFH 395
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,879,435
Number of extensions: 796499
Number of successful extensions: 2345
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2331
Number of HSP's successfully gapped: 5
Length of query: 505
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 400
Effective length of database: 11,553,331
Effective search space: 4621332400
Effective search space used: 4621332400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)