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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0172800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Raffinose synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.024) R2 : 0.472
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.984 (0.0591) R2dC : 0.323 R2C : 0.318
β3 : 0.674 (0.0598) R2dE : 0.171 R2E : 0.143
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.139 (0.0534) R2dN8 : 0.0118 R2N8 : -0.0234
σ : 0.442
deviance : 90.23
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_____
C
peak time of C : 20.7
E
wheather : atmosphere
threshold : 1011
memory length : 13972
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.94 0.436 11.4 -0.195 0.972 0.668 -0.0486 -0.534 0.0903 20.8 1010 9859 -- --
86.82 0.434 11.4 -0.314 0.974 0.642 -0.0597 -- 0.0784 20.8 1011 10288 -- --
85.95 0.432 11.4 -0.194 0.972 0.668 -- -0.535 0.0901 20.8 1010 9860 -- --
86.64 0.434 11.4 -0.388 0.974 0.628 -- -- 0.0616 20.8 1011 10291 -- --
139.77 0.551 11.4 -0.173 -- 0.709 -- -0.583 0.113 -- 1010 9917 -- --
105.02 0.48 11.5 -0.63 0.983 -- -0.103 -- -0.155 20.7 -- -- -- --
105.06 0.48 11.5 -0.627 0.983 -- -- -- -0.155 20.7 -- -- -- --
140.72 0.553 11.4 -0.35 -- 0.652 -- -- 0.0627 -- 1011 10201 -- --
90.23 0.442 11.4 -- 0.984 0.674 -- -- 0.139 20.7 1011 13972 -- --
159.75 0.591 11.4 -0.629 -- -- -- -- -0.163 -- -- -- -- --
115.42 0.503 11.4 -- 0.985 -- -- -- -0.0849 20.7 -- -- -- --
143.57 0.558 11.4 -- -- 0.854 -- -- 0.0909 -- 1011 31408 -- --
170.18 0.609 11.4 -- -- -- -- -- -0.0929 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.26 humidity 60 43200 < th dose dependent rect. 19 1
2 84.85 wind 9 43200 > th dose independent rect. 14 9
3 84.87 wind 9 43200 < th dose independent rect. 14 9
4 85.03 wind 9 43200 < th dose independent rect. 14 7
6 85.09 wind 7 43200 > th dose dependent rect. 14 7
7 85.10 wind 9 43200 > th dose independent rect. 14 7
8 85.11 radiation 30 14400 < th dose dependent rect. 20 9
9 85.11 wind 7 43200 > th dose dependent rect. 13 10
16 85.23 radiation 30 14400 < th dose dependent rect. 22 7
17 85.24 humidity 70 14400 > th dose independent rect. 19 2
22 85.28 wind 7 43200 < th dose independent rect. 14 1
23 85.29 radiation 20 14400 < th dose independent rect. 16 16
25 85.30 wind 7 43200 > th dose independent rect. 14 1
26 85.32 wind 9 43200 > th dose independent rect. 16 4
28 85.34 wind 9 43200 < th dose independent rect. 19 1
31 85.38 wind 7 43200 > th dose independent rect. 16 1
40 85.45 atmosphere 1010 14400 < th dose independent rect. 5 1
46 85.52 atmosphere 1010 14400 < th dose independent rect. 19 1
49 85.54 atmosphere 1010 14400 > th dose independent rect. 19 1
51 85.55 wind 7 43200 < th dose independent rect. 12 10
65 85.62 wind 7 43200 < th dose independent rect. 16 1
73 85.64 radiation 40 14400 > th dose dependent rect. 14 19
75 85.66 humidity 70 14400 > th dose independent rect. 19 8
79 85.66 wind 5 43200 > th dose dependent rect. 13 1
81 85.67 humidity 70 14400 > th dose independent rect. 19 6
86 85.68 wind 9 43200 > th dose dependent rect. 22 1
94 85.72 atmosphere 1010 14400 > th dose independent rect. 5 2
101 85.74 radiation 40 14400 > th dose dependent rect. 14 1
132 85.85 atmosphere 1010 14400 > th dose dependent rect. 8 1
134 85.86 humidity 60 43200 < th dose independent rect. 19 1
139 85.88 wind 9 43200 < th dose independent rect. 16 4
142 85.88 atmosphere 1010 14400 < th dose independent rect. 18 13
148 85.89 atmosphere 1010 14400 < th dose independent rect. 23 9
155 85.90 atmosphere 1010 14400 > th dose independent rect. 24 8
164 85.91 atmosphere 1005 14400 > th dose dependent rect. 4 1
176 85.93 atmosphere 1010 14400 > th dose independent rect. 24 11
179 85.93 radiation 20 43200 > th dose independent rect. 17 14
189 85.95 atmosphere 1010 14400 > th dose independent rect. 19 12
191 85.95 atmosphere 1010 14400 < th dose independent rect. 23 12
234 85.98 wind 7 43200 > th dose dependent rect. 24 1
254 86.00 atmosphere 1010 14400 < th dose independent rect. 18 17
255 86.01 atmosphere 1010 14400 < th dose independent sin 9 NA
280 86.03 atmosphere 1010 14400 > th dose independent sin 9 NA
285 86.03 wind 9 43200 < th dose independent rect. 13 16
290 86.03 atmosphere 1005 14400 > th dose dependent rect. 24 9
297 86.04 radiation 20 14400 < th dose independent rect. 17 10
306 86.04 atmosphere 1005 14400 > th dose dependent rect. 4 5
316 86.05 wind 9 43200 > th dose independent rect. 13 17
329 86.06 atmosphere 1005 14400 > th dose dependent rect. 1 1
331 86.06 atmosphere 1005 14400 > th dose dependent rect. 24 5
337 86.07 atmosphere 1010 14400 < th dose independent rect. 18 8
433 86.12 radiation 20 43200 > th dose independent rect. 6 1
445 86.12 atmosphere 1010 14400 > th dose independent rect. 19 8
480 86.14 atmosphere 1010 14400 < th dose independent rect. 23 2
481 86.14 atmosphere 1010 14400 < th dose independent rect. 22 4
507 86.16 radiation 20 14400 < th dose independent rect. 17 8
577 86.20 atmosphere 1005 14400 > th dose dependent sin 7 NA
605 86.22 humidity 70 14400 < th dose independent rect. 18 3
654 86.25 wind 7 43200 > th dose dependent rect. 16 4
673 86.26 wind 5 43200 > th dose dependent rect. 16 2
709 86.28 radiation 40 14400 < th dose dependent rect. 18 13
734 86.30 radiation 1 14400 > th dose dependent rect. 4 2
754 86.31 atmosphere 1010 14400 > th dose independent rect. 1 1
809 86.34 radiation 20 14400 < th dose independent rect. 17 1
820 86.34 radiation 1 14400 > th dose dependent rect. 17 14
845 86.36 radiation 20 14400 < th dose dependent rect. 3 3
938 86.41 atmosphere 1010 14400 < th dose independent rect. 1 1
954 86.42 wind 9 43200 > th dose independent rect. 19 1