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Os04g0481100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Seed imbibition protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.48 (0.0275) R2 : 0.571
β1 : 0.945 (0.102) R2dD : 0.0867 R2D : -0.117
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.73 (0.131) R2dE : 0.435 R2E : 0.167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.01 (0.0598) R2dN8 : 0.378 R2N8 : 0.108
σ : 0.512
deviance : 120.95
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.59
memory length : 1646
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.47 0.516 8.49 1.03 0.974 2.16 0.141 -0.01 1.01 1.51 0.8882 1450 -- --
120.45 0.511 8.49 1.03 0.96 2.18 0.139 -- 1.01 1.53 0.866 1453 -- --
120.54 0.511 8.49 1.02 0.969 2.17 -- 0.0146 1.01 1.51 0.8679 1451 -- --
120.53 0.511 8.49 1.02 0.959 2.17 -- -- 1.01 1.52 0.8681 1453 -- --
120.82 0.512 8.47 0.968 -- 2.73 -- -0.315 1.02 -- 1.595 1646 -- --
170.19 0.612 8.55 0.5 1.03 -- -0.0937 -- 0.731 1.34 -- -- -- --
170.23 0.611 8.55 0.503 1.03 -- -- -- 0.731 1.34 -- -- -- --
120.95 0.512 8.48 0.945 -- 2.73 -- -- 1.01 -- 1.59 1646 -- --
143.05 0.557 8.49 -- 0.718 1.78 -- -- 0.9 1.32 1.863 1516 -- --
235.44 0.717 8.54 0.543 -- -- -- -- 0.753 -- -- -- -- --
176.9 0.622 8.57 -- 1.04 -- -- -- 0.675 1.36 -- -- -- --
142.64 0.556 8.51 -- -- 2.42 -- -- 0.881 -- 1.854 1674 -- --
243.23 0.728 8.55 -- -- -- -- -- 0.692 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.12 humidity 80.0 1440 < th dose independent rect. 8 7
2 114.57 humidity 80.0 1440 > th dose independent rect. 7 8
37 117.57 humidity 80.0 1440 < th dose independent rect. 11 2
41 117.67 humidity 70.0 1440 > th dose dependent rect. 8 6
47 117.87 humidity 70.0 1440 > th dose dependent rect. 7 8
54 118.05 radiation 1.0 720 < th dose dependent rect. 20 23
60 118.09 precipitation 0.1 14400 < th dose independent rect. 16 6
61 118.09 precipitation 0.1 14400 < th dose dependent rect. 16 6
62 118.10 humidity 80.0 1440 > th dose independent sin 1 NA
64 118.14 precipitation 0.1 14400 > th dose independent rect. 16 6
65 118.15 humidity 80.0 14400 > th dose independent rect. 13 2
66 118.20 humidity 80.0 1440 < th dose independent sin 1 NA
71 118.28 humidity 80.0 14400 < th dose independent rect. 13 2
80 118.48 precipitation 0.1 14400 < th dose independent rect. 13 9
81 118.48 precipitation 0.1 14400 < th dose dependent rect. 13 9
85 118.51 radiation 1.0 720 < th dose dependent rect. 5 13
88 118.56 precipitation 0.1 14400 > th dose independent rect. 13 9
111 118.97 wind 1.0 14400 > th dose independent rect. 19 10
118 119.07 radiation 1.0 1440 < th dose dependent rect. 16 22
121 119.10 radiation 1.0 720 < th dose dependent rect. 21 21
132 119.25 wind 1.0 43200 < th dose dependent rect. 9 20
138 119.37 wind 1.0 43200 > th dose independent rect. 24 2
140 119.40 humidity 80.0 43200 > th dose independent rect. 3 5
143 119.43 radiation 1.0 1440 < th dose dependent rect. 6 23
148 119.52 radiation 1.0 1440 < th dose dependent rect. 15 17
153 119.57 precipitation 0.1 14400 < th dose independent rect. 16 3
154 119.57 precipitation 0.1 14400 < th dose dependent rect. 16 3
159 119.65 precipitation 0.1 14400 < th dose independent rect. 13 12
160 119.65 precipitation 0.1 14400 < th dose dependent rect. 13 12
161 119.66 precipitation 0.1 14400 > th dose independent rect. 16 3
175 119.72 humidity 80.0 14400 < th dose independent rect. 12 5
186 119.76 precipitation 0.1 14400 > th dose dependent rect. 16 2
193 119.78 radiation 1.0 1440 < th dose dependent rect. 13 19
218 119.88 humidity 70.0 1440 > th dose dependent sin 1 NA
221 119.89 radiation 1.0 1440 < th dose dependent rect. 6 19
226 119.91 radiation 1.0 1440 < th dose dependent rect. 6 17
253 120.09 radiation 1.0 1440 < th dose dependent rect. 10 22
262 120.16 humidity 80.0 43200 < th dose independent rect. 2 7
268 120.21 humidity 80.0 14400 > th dose independent rect. 12 6
292 120.31 radiation 1.0 1440 < th dose dependent rect. 13 23
294 120.33 radiation 1.0 1440 < th dose dependent rect. 16 13
302 120.36 humidity 80.0 43200 < th dose independent rect. 3 5
310 120.41 radiation 1.0 1440 < th dose dependent rect. 16 9
314 120.43 radiation 1.0 1440 < th dose dependent sin 13 NA
320 120.45 radiation 1.0 1440 < th dose dependent rect. 16 5
321 120.45 radiation 1.0 1440 < th dose dependent rect. 16 7
322 120.46 radiation 1.0 1440 < th dose dependent rect. 16 3
345 120.58 radiation 1.0 1440 < th dose dependent rect. 4 17
346 120.58 radiation 1.0 1440 < th dose dependent rect. 4 19
375 120.62 radiation 1.0 1440 < th dose dependent rect. 24 21
380 120.62 radiation 1.0 1440 < th dose dependent rect. 24 23
381 120.63 radiation 1.0 1440 < th dose dependent no NA NA
383 120.63 radiation 1.0 1440 < th dose dependent rect. 24 19
422 120.78 humidity 80.0 43200 < th dose independent rect. 22 11
423 120.78 precipitation 0.1 14400 > th dose dependent rect. 13 13
445 120.88 precipitation 0.1 14400 > th dose dependent rect. 13 10
455 120.92 wind 1.0 14400 < th dose independent rect. 19 10
464 120.97 precipitation 0.1 14400 > th dose dependent rect. 16 6
492 121.17 precipitation 0.1 14400 > th dose dependent rect. 16 10
539 121.47 humidity 80.0 43200 < th dose independent rect. 3 1
544 121.49 precipitation 0.1 14400 < th dose independent sin 18 NA
546 121.49 precipitation 0.1 14400 < th dose dependent sin 18 NA
548 121.52 precipitation 0.1 14400 > th dose independent sin 18 NA
563 121.61 precipitation 0.1 43200 < th dose independent rect. 23 1
564 121.61 precipitation 0.1 43200 < th dose dependent rect. 23 1
566 121.62 radiation 1.0 720 < th dose independent rect. 5 13
567 121.63 wind 1.0 14400 > th dose independent rect. 21 8
577 121.70 wind 1.0 43200 < th dose independent rect. 24 2
596 121.81 precipitation 0.1 43200 > th dose independent rect. 23 1
598 121.81 precipitation 0.1 43200 > th dose dependent rect. 23 1
640 121.93 precipitation 0.1 14400 > th dose dependent rect. 13 6
656 122.01 wind 7.0 43200 > th dose independent rect. 15 1
659 122.03 radiation 1.0 1440 < th dose dependent sin 1 NA
681 122.19 wind 3.0 43200 < th dose dependent rect. 11 1
709 122.37 wind 7.0 43200 < th dose independent rect. 15 1
716 122.39 humidity 80.0 43200 > th dose independent rect. 22 11
748 122.55 radiation 1.0 720 < th dose independent rect. 21 21
758 122.61 radiation 1.0 720 < th dose independent rect. 20 23
767 122.65 humidity 80.0 14400 > th dose independent rect. 16 1
786 122.74 precipitation 0.1 14400 > th dose dependent sin 17 NA
839 123.01 radiation 1.0 720 < th dose independent rect. 5 22
863 123.14 humidity 90.0 14400 < th dose dependent rect. 3 1
876 123.26 humidity 90.0 43200 < th dose independent rect. 20 1
888 123.32 humidity 60.0 43200 > th dose independent rect. 9 1
914 123.48 radiation 1.0 1440 < th dose independent rect. 6 19
916 123.49 radiation 1.0 1440 < th dose independent rect. 6 17
952 123.57 wind 3.0 43200 > th dose independent rect. 3 14
978 123.69 humidity 60.0 43200 < th dose independent rect. 9 1