BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0161100 Os06g0161100|Os06g0161100
(360 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0161100 682 0.0
Os06g0161800 Protein of unknown function DUF569 family protein 150 2e-36
Os06g0161900 Protein of unknown function DUF569 family protein 148 6e-36
Os08g0164300 Protein of unknown function DUF569 family protein 105 6e-23
Os10g0358900 85 7e-17
Os08g0164400 82 5e-16
>Os06g0161100
Length = 360
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/360 (92%), Positives = 333/360 (92%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLHS 60
MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLHS
Sbjct: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLHS 60
Query: 61 AAYGRYLAATGKPGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRHATGRNLR 120
AAYGRYLAATGKPGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRHATGRNLR
Sbjct: 61 AAYGRYLAATGKPGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRHATGRNLR 120
Query: 121 ANHGAGATVDDRYSRMLLWVDQVVEAIPSADSVPRPPPISRRQDGPEIRTIRFVPAAPNG 180
ANHGAGATVDDRYSRMLLWVDQVVEAIPSADSVPRPPPISRRQDGPEIRTIRFVPAAPNG
Sbjct: 121 ANHGAGATVDDRYSRMLLWVDQVVEAIPSADSVPRPPPISRRQDGPEIRTIRFVPAAPNG 180
Query: 181 TIAEDWRTFQFTGRSVQRLKEEITSRAGEATQYCVQAGRYGRLIPLTHELPHNTEXXXXX 240
TIAEDWRTFQFTGRSVQRLKEEITSRAGEATQYCVQAGRYGRLIPLTHELPHNTE
Sbjct: 181 TIAEDWRTFQFTGRSVQRLKEEITSRAGEATQYCVQAGRYGRLIPLTHELPHNTETIDII 240
Query: 241 XXXXXXXXPHMDNSPRTQLSAPESLGEHRVADIQTSYSHRLHTNNVLESQQRKTGITRAE 300
PHMDNSPRTQLSAPESLGEHRVADIQTSYSHRLHTNNVLESQQRKTGITRAE
Sbjct: 241 IMMTGTTDPHMDNSPRTQLSAPESLGEHRVADIQTSYSHRLHTNNVLESQQRKTGITRAE 300
Query: 301 LELKTRNIHWGDLNXXXXXXXXXXXXXXYNELLAAENCISKSQEDDNQVCCVNMHREKKG 360
LELKTRNIHWGDLN YNELLAAENCISKSQEDDNQVCCVNMHREKKG
Sbjct: 301 LELKTRNIHWGDLNLEEKKRTRKELKAEYNELLAAENCISKSQEDDNQVCCVNMHREKKG 360
>Os06g0161800 Protein of unknown function DUF569 family protein
Length = 274
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 139/253 (54%), Gaps = 26/253 (10%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHAD-EDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLH 59
ME+F DR HV LRSR HG YLHAD DG V L P A+ A W VH+ R L+LH
Sbjct: 1 MERFQDRHHVWLRSREHGLYLHADLADGSSVYLHPYRATARAAWAVHVLHHFDGRMLMLH 60
Query: 60 SAAYGRYLAATGKPGPS-----GL-RGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRH 113
SAA GRYLAAT P + GL G+RV L +LDRL + W + +A G DVLL H
Sbjct: 61 SAANGRYLAATTSPWAATAARFGLGGGNRVTLRDLDRLPMFAAGWFPIVSASG-DVLLGH 119
Query: 114 ATGRNLRA---NHGAGATVDDRYSRM--LLWVDQVVEAIPSADSVPRPPPISRRQDGPEI 168
A+ R LRA G G TV+ SR W VVEAIP +S+PR P + G
Sbjct: 120 ASDRFLRAIDRGDGNGVTVEVSDSRRPNTPW---VVEAIPPIESIPRLPHLV--GIGHIA 174
Query: 169 RTIRFV---PAAPNGTIAE-DWRTFQFTGRSVQRLKEEITSRAGEATQ----YCVQAGRY 220
R IRFV A+ +GT W F+FTGRS+ L+ E+ R A CV+AG +
Sbjct: 175 RAIRFVRAERASTDGTFPHVAWACFEFTGRSLFNLRTELARRLNFAVVSDVIMCVRAGLF 234
Query: 221 GRLIPLTHELPHN 233
GRL PL +LP N
Sbjct: 235 GRLTPLITDLPPN 247
>Os06g0161900 Protein of unknown function DUF569 family protein
Length = 273
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 132/251 (52%), Gaps = 23/251 (9%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTV---HLEGGSPQRRLL 57
MEQFHD HV LRSR GTYL AD+DGRGVS+ AS+ A WTV HL G L+
Sbjct: 1 MEQFHDGHHVWLRSRAQGTYLRADDDGRGVSMGQGRASVHAAWTVHTHHLNAGDVD-ILM 59
Query: 58 LHSAAYGRYLA-ATGKPGPSGLRGHRVALI--NLDRLDDESVSWEAVRTAKGDDVLLRHA 114
LHSAA GRYLA G L G+R ++I +LD+ W A+R+ GDDVLLRH
Sbjct: 60 LHSAANGRYLATGLGWTRRRLLSGNRASIILRDLDQEVFPPACWFAIRSGWGDDVLLRHC 119
Query: 115 TGRNLRAN--------HGAGATVDDRYSRMLLWVDQVVEAIPSADSVPRPPPISRRQDGP 166
+ R LRA+ +G G D R L VVEAIP +S+PRPP S G
Sbjct: 120 SWRFLRADDRKWNWNRNGTGVIADMIDGRRLARWQWVVEAIPPRNSIPRPPNPS-PSFGF 178
Query: 167 EIRTIRFVPAAPNGTIAEDWRTFQFTGRSVQRLKEEITSRAG----EATQYCVQAGRYGR 222
R I F N W FTGRS L +++ R G + CV+AG YGR
Sbjct: 179 FARRIIFRRLTHNDL---QWVWIWFTGRSALHLWNQLSRRMGFEPDPNSTMCVRAGTYGR 235
Query: 223 LIPLTHELPHN 233
L PL +LP N
Sbjct: 236 LTPLVTDLPRN 246
>Os08g0164300 Protein of unknown function DUF569 family protein
Length = 335
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 123/272 (45%), Gaps = 51/272 (18%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTG--ASLTAVWTVHLE-GGSPQRRLL 57
M+ FH VRLR+ TY+ ADEDGR V G S A+W V L G P + +
Sbjct: 53 MQVFHGAQFVRLRNLWEETYITADEDGRSVYHYDPGRRPSHEAIWAVQLAVAGEPPTQYV 112
Query: 58 LHSAAYGRYLAATGK---------PGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDD 108
L AYGRYL A P+ + G R + D+ +++ W AVR G
Sbjct: 113 LLRGAYGRYLGAPDAVERRWPLSCCCPAPVVGQR----DFDQPVVDAIMWRAVRRT-GHV 167
Query: 109 VLLRHATGRNLRANH--------------GAGATVDDRYSRMLLWVDQVVEAIPSADSVP 154
V L +GR LR G G DD + L W E P S
Sbjct: 168 VCLHDKSGRYLRGKLMSTLVCGGRPSLTVGDGRLSDD--EKELRW-----EVRPVLPSPG 220
Query: 155 RPP-PISRRQDGPEI----------RTIRFVPAAPNGTIAEDWRTFQFTGRSVQRLKEEI 203
RP PI+ D E+ R I+FV AP+G W +FQ+ GRSVQ L+ E+
Sbjct: 221 RPELPIATEADLAELFVKICFPPRRREIQFV--APDGDGNIVWDSFQYQGRSVQLLRNEL 278
Query: 204 TSRAGEATQYCVQAGRYGRLIPLTHELPHNTE 235
+R G A CV+AGR+GRL PL LPH+ E
Sbjct: 279 ENRVGYAITMCVRAGRHGRLTPLLINLPHSRE 310
>Os10g0358900
Length = 537
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 122/267 (45%), Gaps = 37/267 (13%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGV---SLQPTGASL-TAVWTVH-LEGGSPQRR 55
ME F + LR G++LHADEDGR V S++ A L AVW V L G+ R
Sbjct: 1 MEVFRGVEFAALRLWPCGSFLHADEDGRSVYHGSVRDGDAWLPNAVWAVEELVAGASHTR 60
Query: 56 LLLHSAAYGRYLAA------------TGKPGPSG-LRGHRVALINLDRLDDE--SVSWEA 100
+L AYGRYL A P PS L + DR D E + W
Sbjct: 61 YVLLRGAYGRYLGAGAPDARDRDQERCACPLPSCPLPCCSLQAAQRDRDDAEPDDIMWRP 120
Query: 101 VRTA----KGDDVLLRHATGRNLRANHGA-----GATVDDRY-SRMLLWVDQVVEAIPSA 150
+ + G VLL+ +GR LR N G G +VD + M L + V +P+
Sbjct: 121 IGCSGTDIAGSVVLLQDRSGRYLRGNQGFLSRHHGVSVDVNIGNEMTLRWEVVRVRVPTR 180
Query: 151 DSVPRPPPISRRQDGPEI-RTIRFVPAAPNGTIAEDWRTFQFTGRSVQRLKEEITSRAG- 208
P P + P + R I+FV + + +FTGRSV L+E++ R G
Sbjct: 181 ---PERPIVPHLPCWPLLNREIQFVTVDDADNFG--FGSVRFTGRSVDLLREDLMRRIGY 235
Query: 209 EATQYCVQAGRYGRLIPLTHELPHNTE 235
+ CV+AGR+GRL PL +LPH+ E
Sbjct: 236 DDFTMCVRAGRHGRLTPLFIDLPHSRE 262
>Os08g0164400
Length = 353
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 115/268 (42%), Gaps = 42/268 (15%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGV---SLQPTGASL---TAVWTV-HLEGGSPQ 53
ME F + V LR +YLHADE+GR V +L+ AVW V + G P
Sbjct: 1 MEVFQGVEFVALRVWCCNSYLHADENGRSVYHGNLRGGSGGGSLHNAVWAVEEVVAGVPP 60
Query: 54 RRLLLHSAAYGRYLAATGKPG--PSGLRGHRVALINLDRLDDESVSWEAVRT-----AKG 106
R +L AYGRYL + P G A + D LD ++ W AV A+G
Sbjct: 61 TRYVLLRGAYGRYLGSPDAPDREREGCCSLEAAQRDRDVLDVGAIMWRAVGCSGPDLARG 120
Query: 107 DDVLLRHATGRNLRANH-------GAGATVDDRYSRMLLWVDQVVEAIPSADSVPRPP-P 158
VLL +GR LR N G D L W +VV PS RP P
Sbjct: 121 CVVLLHDKSGRYLRGNQTFLARRPGVSVHSDVDNETSLRW--EVVRVTPSQ---VRPELP 175
Query: 159 ISRRQD----------GPEIRTIRFVPAAPNGTIAEDWRTFQFTGRSVQRLKEEITSRAG 208
I+ + P R I+FV A D FTG+SVQ L+E++ G
Sbjct: 176 IATECNLTKNLVAACFPPLRRQIQFVTAGAGAAGNID----VFTGKSVQLLREKLAGILG 231
Query: 209 -EATQYCVQAGRYGRLIPLTHELPHNTE 235
+ CV+AG +GRL PL +LP + E
Sbjct: 232 YDEFTLCVRAGIHGRLTPLLIDLPRSRE 259
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,033,882
Number of extensions: 579897
Number of successful extensions: 1392
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 6
Length of query: 360
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 258
Effective length of database: 11,709,973
Effective search space: 3021173034
Effective search space used: 3021173034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)