Os06g0161100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os06g0161100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.78 | 0.628 | 2.92 | -0.174 | 0.129 | 13.1 | 0.276 | -30.8 | 0.0543 | 6.3 | 49.2 | 33 | -- | -- |
| 186.99 | 0.642 | 2.81 | 0.173 | 0.0657 | 1.48 | 0.105 | -- | 0.039 | 6.93 | 49.2 | 33 | -- | -- |
| 177.63 | 0.626 | 3.15 | -0.74 | 0.0984 | 50.6 | -- | -128 | 0.0475 | 6.69 | 49 | 33 | -- | -- |
| 185.5 | 0.639 | 2.81 | 0.174 | 0.0762 | 1.56 | -- | -- | 0.0459 | 6.52 | 51.42 | 31 | -- | -- |
| 176.48 | 0.619 | 3.22 | -0.762 | -- | 50.6 | -- | -127 | 0.147 | -- | 48.03 | 32 | -- | -- |
| 193.28 | 0.652 | 2.81 | 0.235 | 0.0822 | -- | 0.187 | -- | 0.0326 | 9.32 | -- | -- | -- | -- |
| 193.4 | 0.651 | 2.81 | 0.242 | 0.0817 | -- | -- | -- | 0.0327 | 9.2 | -- | -- | -- | -- |
| 185.78 | 0.638 | 2.81 | 0.178 | -- | 1.55 | -- | -- | 0.0482 | -- | 51.59 | 20 | -- | -- |
| 186.26 | 0.639 | 2.81 | -- | 0.0804 | 1.61 | -- | -- | 0.0283 | 6.2 | 51.7 | 22 | -- | -- |
| 193.79 | 0.65 | 2.81 | 0.242 | -- | -- | -- | -- | 0.0331 | -- | -- | -- | -- | -- |
| 194.95 | 0.653 | 2.82 | -- | 0.082 | -- | -- | -- | 0.00578 | 8.98 | -- | -- | -- | -- |
| 186.59 | 0.638 | 2.81 | -- | -- | 1.6 | -- | -- | 0.0296 | -- | 51.7 | 22 | -- | -- |
| 195.33 | 0.652 | 2.82 | -- | -- | -- | -- | -- | 0.00631 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.41 | wind | 5.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 2 | 171.15 | humidity | 50.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 3 | 171.69 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 4 | 171.72 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 5 | 171.81 | temperature | 30.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 8 | 172.11 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 10 | 172.18 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 11 | 173.06 | wind | 7.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 14 | 175.01 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 34 | 175.33 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 43 | 175.48 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 44 | 175.49 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 46 | 175.54 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 49 | 175.62 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 50 | 175.68 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 2 | 12 |
| 62 | 175.93 | humidity | 50.0 | 30 | < th | dose dependent | rect. | 11 | 6 |
| 161 | 177.72 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 162 | 177.77 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 164 | 177.92 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 214 | 178.82 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 9 | 12 |
| 221 | 179.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 258 | 179.36 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 267 | 179.56 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 19 | 19 |
| 282 | 180.08 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 294 | 180.50 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 6 |
| 313 | 180.61 | humidity | 50.0 | 30 | < th | dose dependent | rect. | 16 | 20 |
| 321 | 181.03 | humidity | 50.0 | 30 | < th | dose dependent | sin | 4 | NA |
| 368 | 181.32 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 8 | 3 |
| 380 | 181.49 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 6 | 2 |
| 381 | 181.50 | radiation | 20.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 384 | 181.59 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 386 | 181.62 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 6 | 2 |
| 409 | 181.98 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 411 | 182.02 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 413 | 182.02 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 418 | 182.02 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 1 |
| 419 | 182.02 | temperature | 10.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 420 | 182.02 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 440 | 182.37 | humidity | 50.0 | 30 | < th | dose dependent | no | NA | NA |
| 601 | 182.51 | humidity | 50.0 | 90 | < th | dose independent | sin | 7 | NA |
| 604 | 182.56 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 616 | 182.63 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 19 | 8 |
| 622 | 182.75 | humidity | 50.0 | 30 | < th | dose independent | rect. | 16 | 20 |
| 624 | 182.79 | wind | 7.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 625 | 182.83 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 633 | 183.01 | humidity | 50.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 662 | 183.15 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 663 | 183.19 | radiation | 30.0 | 30 | < th | dose independent | rect. | 8 | 9 |
| 664 | 183.19 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 22 | 5 |
| 672 | 183.51 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 673 | 183.52 | humidity | 90.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 684 | 183.64 | humidity | 90.0 | 720 | < th | dose independent | rect. | 4 | 1 |
| 690 | 183.69 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 691 | 183.70 | wind | 9.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 696 | 183.75 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 714 | 183.84 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 721 | 183.88 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 732 | 183.96 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 3 | 8 |
| 737 | 183.98 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 738 | 183.98 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 740 | 183.99 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 820 | 184.23 | humidity | 50.0 | 10 | > th | dose independent | sin | 10 | NA |
| 841 | 184.36 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 860 | 184.48 | wind | 1.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 869 | 184.57 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 870 | 184.60 | humidity | 90.0 | 720 | > th | dose independent | rect. | 3 | 2 |
| 886 | 184.67 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 912 | 184.82 | humidity | 50.0 | 10 | < th | dose independent | sin | 10 | NA |
| 914 | 184.83 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 3 | 1 |