BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0161100 Os06g0161100|Os06g0161100
(360 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G59710.1 | chr1:21938623-21939673 FORWARD LENGTH=301 69 3e-12
AT3G28630.1 | chr3:10729065-10730564 FORWARD LENGTH=336 66 3e-11
AT1G69900.1 | chr1:26326520-26327816 REVERSE LENGTH=398 65 5e-11
AT1G69890.1 | chr1:26323426-26324527 REVERSE LENGTH=280 60 1e-09
AT1G27100.1 | chr1:9407557-9411074 REVERSE LENGTH=520 60 2e-09
AT3G01311.1 | chr3:103043-104287 REVERSE LENGTH=293 54 1e-07
>AT1G59710.1 | chr1:21938623-21939673 FORWARD LENGTH=301
Length = 300
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 77/160 (48%), Gaps = 19/160 (11%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLHS 60
ME F VRLRS H YL ADED V+ + G++ A WTV + GS L+
Sbjct: 1 MEIFQKAKAVRLRSH-HDKYLVADEDEESVTQERNGSAGAAKWTVEIIPGS--TNLIRLK 57
Query: 61 AAYGRYLAATGKPGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRHAT--GRN 118
+AYG+YL A+ KP G G +V RLD S++WE +R D L++ T G
Sbjct: 58 SAYGKYLTASNKPFLLGATGKKVLQTKPSRLDS-SLAWEPIR----DSALVKLKTRYGNF 112
Query: 119 LRANHGA----GATVDDRYSR-----MLLWVDQVVEAIPS 149
LR N G + D R +LW VVE +P+
Sbjct: 113 LRGNGGLPPWRNSVTHDIPHRSATQEWVLWHIDVVEILPA 152
>AT3G28630.1 | chr3:10729065-10730564 FORWARD LENGTH=336
Length = 335
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLHS 60
ME F + VRLRS H YL A+ED VS G S+ A WTV + + RL
Sbjct: 33 MEIFKKAETVRLRS-YHDKYLLAEEDEESVSQDRDGRSMNARWTVEVVEKADVIRL---K 88
Query: 61 AAYGRYLAATGKPGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRHATGRNLR 120
+ +G+YL A+ P G+ G RV L R D S WE VR +G V L+ G+ LR
Sbjct: 89 SCFGKYLTASNIPMFLGMTGKRVTQ-TLPRRLDSSTEWEPVR--EGVQVRLKTRYGQYLR 145
Query: 121 ANHG 124
AN G
Sbjct: 146 ANGG 149
>AT1G69900.1 | chr1:26326520-26327816 REVERSE LENGTH=398
Length = 397
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 1 MEQFHDRDHVRLRSRVH-GTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLH 59
ME F D VRLRS H G YL AD+D GV + G+S A W V + GS ++ + L
Sbjct: 241 MEIFRDAKSVRLRSYAHHGKYLIADDDEEGVIMGKNGSSKEARWRVEMVPGS-EKAIRLK 299
Query: 60 SAAYGRYLAATGKPGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRHATGRN- 118
S +G YL A+ + G GH+V R D+ + WE V+ +G V LR G N
Sbjct: 300 S-CHGGYLTASNERFLLGATGHKVVQSRKIRADEPAGEWEPVK--EGSRVKLRSRNGGNY 356
Query: 119 LRANHGA 125
LRAN G
Sbjct: 357 LRANGGV 363
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLHS 60
ME F++ VRLRS H TY++A ED + V G S ++WTV + P + +
Sbjct: 1 MELFNNGTAVRLRS-CHDTYIYAVEDEKTVRQSSDGTSRQSLWTVEMVPRKP--KFIRLK 57
Query: 61 AAYGRYLAATGKPGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRHATGRNLR 120
+ YG+YL A+ G+ G +V R + WE ++ V L + LR
Sbjct: 58 SCYGKYLTASESSFLLGMTGAKVIQTPPFRQAEHESDWEPIKEE--STVKLMSWNEKYLR 115
Query: 121 ANHGA----GATVDDR------YSRMLLWVDQVVE 145
N GA + DR + +LW +VVE
Sbjct: 116 GNGGAPPWRNSVTCDREPHISATKKWILWSVEVVE 150
>AT1G69890.1 | chr1:26323426-26324527 REVERSE LENGTH=280
Length = 279
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 111/279 (39%), Gaps = 57/279 (20%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLHS 60
M+ F+ VR+R+ VH YL ADED V+ G+ A W V GS + ++
Sbjct: 1 MDFFNQAKAVRMRN-VHDKYLTADEDEETVTQDRNGSDKRARWIVEPVRGSFE--VIRLR 57
Query: 61 AAYGRYLAATGKPGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRHATGRNLR 120
+ YG YL A+ + G G +V L RLD SV WE VR +G + L+ G LR
Sbjct: 58 SCYGNYLTASNERFLLGATGRKVVLSKPARLDS-SVEWEPVR--EGSKMKLKTRYGNLLR 114
Query: 121 ANHGAGA---TVDDRYSRML---LWVDQVVEAI--------------------------- 147
AN G +V S +L LW VVE +
Sbjct: 115 ANGGLPPWRNSVTHDTSHVLDSFLWDVDVVEILVGTTTPAPAPAPVTTPPPHRRPSYTYS 174
Query: 148 --------PSADSVPRPPPISRRQDGPEIRTIRFVPAAPNGTIAED---WRTFQFTGRSV 196
S + + PPP S E R I + A G + E+ F G SV
Sbjct: 175 PVSRTSSEKSEEELTVPPPKS------EGRPIYYHIADEEGHVEEESAVGYALTFKGNSV 228
Query: 197 QRLKEEITSRAG-EATQYCVQAGRYGRLIPLTHELPHNT 234
++L + + + C + G+L PL +LP N+
Sbjct: 229 EQLTQALQEETSMDDVVVCTRHPSNGKLFPLRLQLPPNS 267
>AT1G27100.1 | chr1:9407557-9411074 REVERSE LENGTH=520
Length = 519
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLHS 60
ME F +R+R+ H YL AD+D V+ G++ A WTV E ++
Sbjct: 227 MEFFQKAKAIRMRNS-HNKYLTADDDEETVTQNRNGSTKNARWTV--EPVRDSFHVIRLK 283
Query: 61 AAYGRYLAATGKPGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRHATGRNLR 120
+ YG+YL A+ + G G +V + L R+ D SV WE +R +G + LR +G LR
Sbjct: 284 SCYGKYLTASNERFLLGATGKKVIQLKLSRV-DSSVEWEPLR--EGSKIKLRTRSGNYLR 340
Query: 121 ANHG 124
N G
Sbjct: 341 GNGG 344
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLHS 60
ME F ++V+LRS + +L AD+D + G + AVWTV P L+
Sbjct: 1 MELFTKGNNVKLRSHLD-KFLVADDDQETIRQSRKGDARRAVWTVEPVVDKPN--LIRLK 57
Query: 61 AAYGRYLAATGKPGPSGLRGHRVA-LINLDRLDDESVSWEAVRTAKGDDVLLRHATGRNL 119
+++G YL A+ KP G+ G +V + ++L D WE R G V L+ G+ +
Sbjct: 58 SSHGTYLTASNKPLLLGMTGEKVTQTASFNKLMDWQTQWEPER--DGFQVKLKSWCGKWM 115
Query: 120 RANHG 124
RAN G
Sbjct: 116 RANGG 120
>AT3G01311.1 | chr3:103043-104287 REVERSE LENGTH=293
Length = 292
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 1 MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLLLHS 60
ME F VRLRS + YL ADED V G + WTV + GS RL
Sbjct: 1 MEIFRKATIVRLRSH-NDKYLSADEDQESVHQDRRGTTKNTRWTVEIVPGSNVIRL---Q 56
Query: 61 AAYGRYLAATGKPGPSGLRGHRVALINLDRLDDESVSWEAVRTAKGDDVLLRHATGRNLR 120
+ YG+YL AT G G +V ++L D S WE + + G V + G+ LR
Sbjct: 57 SCYGKYLTATNIHFLLGATGEKVLQTLPEKL-DSSAEWEPL-SDDGVHVRFKSRYGQYLR 114
Query: 121 ANHGA 125
AN G
Sbjct: 115 ANKGV 119
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,652,346
Number of extensions: 305735
Number of successful extensions: 650
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 8
Length of query: 360
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,364,969
Effective search space: 2174891940
Effective search space used: 2174891940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)