Os06g0161800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF569 family protein.
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Os06g0161800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF569 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.69 | 0.555 | 4.01 | 1.65 | 2.25 | 0.433 | 1.15 | 6.34 | 0.939 | 20.1 | 30.3 | 789 | -- | -- |
| 142.39 | 0.556 | 4.07 | 1.04 | 2.17 | 1.15 | 1.39 | -- | 0.942 | 20 | 29.8 | 821 | -- | -- |
| 143.57 | 0.558 | 4.01 | 1.65 | 2.25 | 0.433 | -- | 7.04 | 0.939 | 20.1 | 30.3 | 789 | -- | -- |
| 145.99 | 0.563 | 4.1 | 0.889 | 2.18 | 1.22 | -- | -- | 0.902 | 20.1 | 30.02 | 778 | -- | -- |
| 312.26 | 0.823 | 4.02 | 1.66 | -- | 2.19 | -- | 6.05 | 0.791 | -- | 28.26 | 649 | -- | -- |
| 172.7 | 0.616 | 4.13 | 1.16 | 2.51 | -- | 1.77 | -- | 0.797 | 20.1 | -- | -- | -- | -- |
| 182.11 | 0.632 | 4.13 | 1.11 | 2.51 | -- | -- | -- | 0.799 | 20 | -- | -- | -- | -- |
| 299.16 | 0.806 | 4.13 | 0.578 | -- | 2.52 | -- | -- | 0.49 | -- | 28.2 | 649 | -- | -- |
| 165.7 | 0.6 | 4.12 | -- | 2.15 | 1.37 | -- | -- | 0.817 | 20 | 29.93 | 800 | -- | -- |
| 527.81 | 1.07 | 4.07 | 1.09 | -- | -- | -- | -- | 0.767 | -- | -- | -- | -- | -- |
| 214.55 | 0.685 | 4.16 | -- | 2.51 | -- | -- | -- | 0.676 | 20.1 | -- | -- | -- | -- |
| 307.35 | 0.817 | 4.15 | -- | -- | 2.62 | -- | -- | 0.411 | -- | 28.21 | 659 | -- | -- |
| 558.9 | 1.1 | 4.1 | -- | -- | -- | -- | -- | 0.647 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.69 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 4 | 139.18 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 22 |
| 5 | 139.19 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 11 |
| 6 | 139.20 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 13 |
| 9 | 139.27 | temperature | 30 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 13 | 139.47 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 17 | 139.62 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 18 |
| 41 | 139.95 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 76 | 140.51 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 1 |
| 96 | 140.56 | temperature | 25 | 720 | > th | dose dependent | sin | 22 | NA |
| 101 | 140.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 10 |
| 102 | 140.65 | temperature | 30 | 720 | < th | dose independent | sin | 23 | NA |
| 129 | 140.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 16 |
| 143 | 140.79 | temperature | 30 | 720 | > th | dose independent | rect. | 10 | 23 |
| 149 | 140.81 | temperature | 30 | 720 | > th | dose independent | sin | 23 | NA |
| 151 | 140.81 | temperature | 30 | 720 | > th | dose dependent | sin | 5 | NA |
| 159 | 140.84 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 160 | 140.84 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 10 |
| 278 | 140.88 | temperature | 30 | 720 | > th | dose dependent | sin | 9 | NA |
| 313 | 140.99 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 362 | 141.15 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 369 | 141.18 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 23 |
| 439 | 141.43 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 441 | 141.44 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 466 | 141.52 | wind | 3 | 1440 | < th | dose dependent | rect. | 4 | 2 |
| 480 | 141.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 495 | 141.60 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 500 | 141.61 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 533 | 141.68 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 549 | 141.78 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 605 | 141.93 | temperature | 30 | 720 | < th | dose independent | sin | 10 | NA |
| 647 | 142.05 | temperature | 30 | 720 | > th | dose independent | sin | 10 | NA |