Os08g0164300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF569 family protein.
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Os08g0164300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF569 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.65 | 0.281 | 2.83 | 0.06 | 0.072 | -0.525 | 0.0437 | 3.3 | 0.00598 | 6.31 | 49 | 361 | -- | -- |
| 35.7 | 0.278 | 2.84 | 0.0154 | 0.0745 | 0.832 | 0.0555 | -- | 0.00715 | 6.52 | 48 | 352 | -- | -- |
| 35.66 | 0.278 | 2.83 | 0.0609 | 0.0722 | -0.533 | -- | 3.3 | 0.00537 | 6.06 | 49 | 360 | -- | -- |
| 35.7 | 0.278 | 2.84 | 0.0198 | 0.0772 | 0.822 | -- | -- | 0.00706 | 6.12 | 48 | 352 | -- | -- |
| 35.9 | 0.279 | 2.83 | 0.0824 | -- | -0.695 | -- | 3.58 | 0.00324 | -- | 49.85 | 360 | -- | -- |
| 37.32 | 0.286 | 2.84 | 0.0639 | 0.0459 | -- | -0.218 | -- | 0.0022 | 4.64 | -- | -- | -- | -- |
| 37.4 | 0.286 | 2.84 | 0.0656 | 0.0539 | -- | -- | -- | 0.00342 | 6.69 | -- | -- | -- | -- |
| 36 | 0.279 | 2.84 | 0.0251 | -- | 0.772 | -- | -- | 0.00837 | -- | 47 | 352 | -- | -- |
| 35.71 | 0.278 | 2.84 | -- | 0.0784 | 0.831 | -- | -- | 0.00542 | 6.08 | 48 | 352 | -- | -- |
| 37.55 | 0.286 | 2.84 | 0.0668 | -- | -- | -- | -- | 0.0045 | -- | -- | -- | -- | -- |
| 37.51 | 0.286 | 2.84 | -- | 0.0548 | -- | -- | -- | -0.00388 | 6.62 | -- | -- | -- | -- |
| 36.02 | 0.28 | 2.84 | -- | -- | 0.784 | -- | -- | 0.00587 | -- | 47.01 | 352 | -- | -- |
| 37.67 | 0.286 | 2.84 | -- | -- | -- | -- | -- | -0.00292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.47 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 93 | 31.47 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 185 | 32.33 | wind | 1.0 | 30 | < th | dose independent | rect. | 17 | 1 |
| 196 | 32.33 | wind | 1.0 | 30 | < th | dose dependent | rect. | 17 | 1 |
| 223 | 32.62 | humidity | 70.0 | 90 | < th | dose independent | rect. | 17 | 1 |
| 239 | 32.71 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 17 | 1 |
| 338 | 33.95 | humidity | 50.0 | 720 | < th | dose independent | rect. | 11 | 1 |
| 356 | 33.95 | humidity | 50.0 | 720 | < th | dose dependent | rect. | 11 | 1 |
| 376 | 34.31 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 429 | 34.69 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 431 | 34.70 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 432 | 34.70 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 434 | 34.70 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 438 | 34.71 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 445 | 34.72 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 447 | 34.72 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 448 | 34.72 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 453 | 34.72 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 455 | 34.72 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 460 | 34.72 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 461 | 34.72 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 462 | 34.72 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 465 | 34.72 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 470 | 34.72 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 489 | 34.80 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 490 | 34.85 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 493 | 34.88 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 4 |
| 497 | 34.92 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 502 | 34.92 | humidity | 50.0 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 527 | 34.95 | humidity | 50.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 614 | 35.13 | humidity | 50.0 | 270 | < th | dose dependent | sin | 12 | NA |
| 636 | 35.20 | humidity | 50.0 | 270 | < th | dose independent | sin | 12 | NA |
| 658 | 35.31 | radiation | 40.0 | 720 | > th | dose independent | rect. | 10 | 1 |
| 666 | 35.36 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 669 | 35.38 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 672 | 35.39 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 673 | 35.39 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 676 | 35.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 680 | 35.39 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 689 | 35.39 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 690 | 35.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 710 | 35.39 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 713 | 35.39 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 749 | 35.47 | radiation | 40.0 | 90 | > th | dose independent | rect. | 10 | 2 |
| 755 | 35.50 | temperature | 25.0 | 30 | > th | dose independent | rect. | 17 | 1 |
| 759 | 35.52 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 762 | 35.52 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 846 | 35.55 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 898 | 35.61 | temperature | 30.0 | 270 | > th | dose independent | rect. | 15 | 1 |
| 929 | 35.65 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 931 | 35.65 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 19 | 5 |
| 935 | 35.65 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 939 | 35.65 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 940 | 35.65 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 19 | 6 |
| 942 | 35.65 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 943 | 35.66 | wind | 5.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 944 | 35.66 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 948 | 35.66 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 19 | 4 |
| 953 | 35.67 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 957 | 35.68 | wind | 5.0 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 960 | 35.68 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 962 | 35.68 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 963 | 35.68 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 965 | 35.69 | wind | 5.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 966 | 35.69 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 971 | 35.69 | wind | 5.0 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 974 | 35.69 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 21 | 2 |