BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0143400 Os06g0143400|AK072729
(427 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0143400 Similar to Acyl-ACP thioesterase (Fragment) 839 0.0
Os11g0659500 Similar to Acyl-ACP thioesterase (Fragment) 714 0.0
Os02g0644700 Similar to Acyl-ACP thioesterase (Fragment) 513 e-146
Os06g0596300 Similar to Acyl-ACP thioesterase (Fragment) 428 e-120
Os01g0502300 261 5e-70
Os09g0505300 Similar to Br FatA1 231 7e-61
>Os06g0143400 Similar to Acyl-ACP thioesterase (Fragment)
Length = 427
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/427 (95%), Positives = 407/427 (95%)
Query: 1 MAGSLXXXXXXXXXXXXXXXXXXXXKNTTGELPENLSVRGIVAKPNPSPGAMQVKAQAQA 60
MAGSL KNTTGELPENLSVRGIVAKPNPSPGAMQVKAQAQA
Sbjct: 1 MAGSLAASAFFPVPGSSPAASARSSKNTTGELPENLSVRGIVAKPNPSPGAMQVKAQAQA 60
Query: 61 LPKVNGTKVNLKTTSPDKEDIIPYTAPKTFYNQLPDWSMLLAAVTTIFLAAEKQWTLLDW 120
LPKVNGTKVNLKTTSPDKEDIIPYTAPKTFYNQLPDWSMLLAAVTTIFLAAEKQWTLLDW
Sbjct: 61 LPKVNGTKVNLKTTSPDKEDIIPYTAPKTFYNQLPDWSMLLAAVTTIFLAAEKQWTLLDW 120
Query: 121 KPKKPDMLADTFGFGRIIQDGLVFRQNFLIRSYEIGADRTASIETLMNHLQETALNHVKT 180
KPKKPDMLADTFGFGRIIQDGLVFRQNFLIRSYEIGADRTASIETLMNHLQETALNHVKT
Sbjct: 121 KPKKPDMLADTFGFGRIIQDGLVFRQNFLIRSYEIGADRTASIETLMNHLQETALNHVKT 180
Query: 181 AGLLGDGFGATPEMSKRNLIWVVSKIQLLVERYPSWGDMVQVDTWVAAAGKNGMRRDWHV 240
AGLLGDGFGATPEMSKRNLIWVVSKIQLLVERYPSWGDMVQVDTWVAAAGKNGMRRDWHV
Sbjct: 181 AGLLGDGFGATPEMSKRNLIWVVSKIQLLVERYPSWGDMVQVDTWVAAAGKNGMRRDWHV 240
Query: 241 RDYNSGQTILRATSVWVMMNKNTRRLSKMPDEVRAEIGPYFNGRSAISEEQGEKLPKPGT 300
RDYNSGQTILRATSVWVMMNKNTRRLSKMPDEVRAEIGPYFNGRSAISEEQGEKLPKPGT
Sbjct: 241 RDYNSGQTILRATSVWVMMNKNTRRLSKMPDEVRAEIGPYFNGRSAISEEQGEKLPKPGT 300
Query: 301 TFDGAATKQFTRKGLTPKWSDLDVNQHVNNVKYIGWILESAPISILEKHELASMTLDYRK 360
TFDGAATKQFTRKGLTPKWSDLDVNQHVNNVKYIGWILESAPISILEKHELASMTLDYRK
Sbjct: 301 TFDGAATKQFTRKGLTPKWSDLDVNQHVNNVKYIGWILESAPISILEKHELASMTLDYRK 360
Query: 361 ECGRDSVLQSLTAVSGECDDGNTESSIQCDHLLQLESGADIVKAHTEWRPKRAQGEGNMG 420
ECGRDSVLQSLTAVSGECDDGNTESSIQCDHLLQLESGADIVKAHTEWRPKRAQGEGNMG
Sbjct: 361 ECGRDSVLQSLTAVSGECDDGNTESSIQCDHLLQLESGADIVKAHTEWRPKRAQGEGNMG 420
Query: 421 FFPAESA 427
FFPAESA
Sbjct: 421 FFPAESA 427
>Os11g0659500 Similar to Acyl-ACP thioesterase (Fragment)
Length = 425
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/390 (86%), Positives = 357/390 (91%), Gaps = 3/390 (0%)
Query: 29 TGELPENLSVRGIVAKPNPSPGAMQVKAQAQALPKVNGTKVNLKTTSPDKEDIIPYTAPK 88
TGELPENLSVRGIVAKPNP P AMQVKAQAQ LPKVNGTKVNLKT PD E+ +PY+APK
Sbjct: 31 TGELPENLSVRGIVAKPNPPPAAMQVKAQAQTLPKVNGTKVNLKTVKPDMEETVPYSAPK 90
Query: 89 TFYNQLPDWSMLLAAVTTIFLAAEKQWTLLDWKPKKPDMLADTFGFGRIIQDGLVFRQNF 148
TFYNQLPDWSMLLAA+TTIFLAAEKQWTLLDWKPKKPDML DTFGFGRIIQDG+VFRQNF
Sbjct: 91 TFYNQLPDWSMLLAAITTIFLAAEKQWTLLDWKPKKPDMLVDTFGFGRIIQDGMVFRQNF 150
Query: 149 LIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGATPEMSKRNLIWVVSKIQL 208
+IRSYEIGADRTASIETLMNHLQETALNHV+TAGLLGDGFGATPEMSKRNLIWVVSKIQL
Sbjct: 151 MIRSYEIGADRTASIETLMNHLQETALNHVRTAGLLGDGFGATPEMSKRNLIWVVSKIQL 210
Query: 209 LVERYPSWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGQTILRATSVWVMMNKNTRRLSK 268
LVE+YP+WGD VQVDTWVAAAGKNGMRRDWHVRDYNSG+TILRATSVWVMM+K TRRLSK
Sbjct: 211 LVEQYPAWGDTVQVDTWVAAAGKNGMRRDWHVRDYNSGRTILRATSVWVMMHKKTRRLSK 270
Query: 269 MPDEVRAEIGPYFNGRSAISEEQGEKLPKPGTTFDGAATKQFTRKGLTPKWSDLDVNQHV 328
MPDEVRAEIGPYFN RSAI+EEQ EKL K G AT+QF RKGLTP+W DLDVNQHV
Sbjct: 271 MPDEVRAEIGPYFNDRSAITEEQSEKLAKTGNKVGDDATEQFIRKGLTPRWGDLDVNQHV 330
Query: 329 NNVKYIGWILESAPISILEKHELASMTLDYRKECGRDSVLQSLTAVSGECDDGNTE---S 385
NNVKYIGWILESAPIS+LEKHELASMTLDYRKECGRDSVLQSLT VSGEC + S
Sbjct: 331 NNVKYIGWILESAPISVLEKHELASMTLDYRKECGRDSVLQSLTTVSGECTSIGADKQAS 390
Query: 386 SIQCDHLLQLESGADIVKAHTEWRPKRAQG 415
+IQCDHLLQLESGADIVKAHTEWRPKR+
Sbjct: 391 AIQCDHLLQLESGADIVKAHTEWRPKRSHA 420
>Os02g0644700 Similar to Acyl-ACP thioesterase (Fragment)
Length = 298
Score = 513 bits (1321), Expect = e-146, Method: Compositional matrix adjust.
Identities = 242/268 (90%), Positives = 255/268 (95%)
Query: 28 TTGELPENLSVRGIVAKPNPSPGAMQVKAQAQALPKVNGTKVNLKTTSPDKEDIIPYTAP 87
TGELPENLSV GIVAKPNP P AMQVKAQAQ LPKVNGTKVNLKT PD E+ +P++AP
Sbjct: 30 VTGELPENLSVCGIVAKPNPPPAAMQVKAQAQTLPKVNGTKVNLKTVKPDMEETVPHSAP 89
Query: 88 KTFYNQLPDWSMLLAAVTTIFLAAEKQWTLLDWKPKKPDMLADTFGFGRIIQDGLVFRQN 147
KTFYNQLPDWSMLLAA+TTIFLAAEKQWTLLDWKPKKPDML DTFGFGRIIQDG+VFRQN
Sbjct: 90 KTFYNQLPDWSMLLAAITTIFLAAEKQWTLLDWKPKKPDMLVDTFGFGRIIQDGMVFRQN 149
Query: 148 FLIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGATPEMSKRNLIWVVSKIQ 207
F+IRSYEIGADRTASIETLMNHLQETALNHV+TAGLLGDGFGATPEMSKRNLIWVVSKIQ
Sbjct: 150 FMIRSYEIGADRTASIETLMNHLQETALNHVRTAGLLGDGFGATPEMSKRNLIWVVSKIQ 209
Query: 208 LLVERYPSWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGQTILRATSVWVMMNKNTRRLS 267
LLVE+YP+WGDMVQVDTWVAAAGKNGMRRDWHVRDYNSG+TILRATSVWVMM+K TRRLS
Sbjct: 210 LLVEQYPAWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGRTILRATSVWVMMHKKTRRLS 269
Query: 268 KMPDEVRAEIGPYFNGRSAISEEQGEKL 295
KMPDEVRAEIGPYFN RSAI+EEQ EKL
Sbjct: 270 KMPDEVRAEIGPYFNDRSAITEEQSEKL 297
>Os06g0596300 Similar to Acyl-ACP thioesterase (Fragment)
Length = 357
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/320 (67%), Positives = 251/320 (78%), Gaps = 8/320 (2%)
Query: 26 KNTTGELPENLSVRGIVAKPNPSPGAM-----QVKAQAQALPKVNGTKVNLKTTSPDK-E 79
K+ GE P++L VRGI AKP S A + + A A+PKVNG L D
Sbjct: 21 KSVLGERPDSLDVRGIAAKPGSSSSAAALRAGKTRTHA-AIPKVNGGSSALADPEHDTMS 79
Query: 80 DIIPYTAPKTFYNQLPDWSMLLAAVTTIFLAAEKQWTLLDWKPKKPDMLADTFGFGRIIQ 139
AP+TFYNQLPDWSMLLAA+TTIFLAAEKQWTLLDWKPK+PDML DTFGFGR+I
Sbjct: 80 SSSSSAAPRTFYNQLPDWSMLLAAITTIFLAAEKQWTLLDWKPKRPDMLTDTFGFGRMIH 139
Query: 140 DGLVFRQNFLIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGATPEMSKRNL 199
+GL+FRQNF IRSYEIGADRTASIETLMNHLQETALNHVK+AGLLGDGFG+TPEMSKR+L
Sbjct: 140 EGLMFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKSAGLLGDGFGSTPEMSKRDL 199
Query: 200 IWVVSKIQLLVERYPSWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGQTILRATSVWVMM 259
WVVS++Q +VERYP WGD V+VDTWV A GKNGMRRDWH+RD +G TIL+ATS WVMM
Sbjct: 200 FWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKNGMRRDWHIRDSVTGHTILKATSKWVMM 259
Query: 260 NKNTRRLSKMPDEVRAEIGPYFNGRSAISEEQGEKLPKPGTTFDGAATKQFTRKGLTPKW 319
+K TRRL+++PDEVR EI PYF ++I +E +KLPK +GA ++ R GLTP+W
Sbjct: 260 HKLTRRLARIPDEVRTEIEPYFFEHASIVDEDNQKLPKL-PDIEGANVAKYVRTGLTPRW 318
Query: 320 SDLDVNQHVNNVKYIGWILE 339
+DLD+NQHVNNVKYIGWILE
Sbjct: 319 ADLDINQHVNNVKYIGWILE 338
>Os01g0502300
Length = 437
Score = 261 bits (668), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/345 (42%), Positives = 199/345 (57%), Gaps = 68/345 (19%)
Query: 129 ADTFGFGRIIQDGLVFRQNFLIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGF 188
D F I++ G+ +RQ ++RSYE+G DRTA++ET++N LQETALNHV +GLLGDGF
Sbjct: 89 VDPFRQAVIVEGGVRYRQTVVVRSYEVGPDRTATLETVLNLLQETALNHVWMSGLLGDGF 148
Query: 189 GATPEMSKRNLIWVVSKIQLLVERYPSW-------------------------------- 216
GAT M NLIWVVS++ + V+ YP W
Sbjct: 149 GATHAMITNNLIWVVSRMHVQVDHYPIWYIILVFVFVHGVLFVQRGRGKKIYAHQTEVGC 208
Query: 217 -GDMVQVDTWVAAAGKNGMRRDWHVRDYNSGQTILRATSVWVMMNKNTRRLSKMPDEVRA 275
G+++++DTWV ++GKNGMRRDW VR +SG +RATS WVMMNK TRRLSKMP EVR
Sbjct: 209 RGEVLEIDTWVGSSGKNGMRRDWLVRGRSSGAIFVRATSTWVMMNKVTRRLSKMPKEVRD 268
Query: 276 EIGPYFNGRSAISEEQGEKLPKPGTTFDGAATKQFTRKGLTPKWSDLDVNQHVNNVKYIG 335
EI P+F R AI E +K+ K D AT + L PK SDLD+N HVNNVKY+
Sbjct: 269 EISPWFIDRHAIDEVATDKIIK----LDTNAT--YVDSDLKPKRSDLDMNHHVNNVKYVR 322
Query: 336 WILESAPISILEKHELASMTLDYRKECGRDSVLQSLT-------------------AVSG 376
W+LE+ P L++H+L+S+ L+YRKECG V+QS+ ++S
Sbjct: 323 WMLETLPDQFLQQHQLSSIILEYRKECGSSDVVQSICQPDEDTIMPGENVSIVMGPSLSQ 382
Query: 377 ECDDGNTESS-------IQCDHLLQLESG---ADIVKAHTEWRPK 411
E +G+ + + HLLQL++ +IV+ T W+ K
Sbjct: 383 EIINGHHSLAGALQQWPTKYTHLLQLKANDKYEEIVRGRTTWKKK 427
>Os09g0505300 Similar to Br FatA1
Length = 276
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/275 (43%), Positives = 169/275 (61%), Gaps = 15/275 (5%)
Query: 147 NFLIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGATPEMSKRNLIWVVSKI 206
+F++R YE+G ++TA++ET+ N LQE NH ++ G DGF T M K LIWV +++
Sbjct: 1 SFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLGLIWVTNRM 60
Query: 207 QLLVERYPSWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGQTILRATSVWVMMNKNTRRL 266
+ + +YP+WGD+V+++TW GK G RRDW ++D +G+ I RATS WVMMN+NTRRL
Sbjct: 61 HIEIYKYPAWGDVVEIETWCQEDGKIGTRRDWILKDLANGEVIGRATSKWVMMNQNTRRL 120
Query: 267 SKMPDEVRAEIGPYF--NGRSAISEEQGEKLPKPGTTFDGAATKQFTRKGLTPKWSDLDV 324
++ D+VR E+ + R A EE L K D A Q +R GL P+ +DLD+
Sbjct: 121 QRVSDDVRDEVFVHCPKTPRLAFPEENNGSLKKIPVLTDPA---QHSRLGLVPRRADLDM 177
Query: 325 NQHVNNVKYIGWILESAPISILEKHELASMTLDYRKECGRDSVLQSLTAV-SGECDDGN- 382
NQHVNNV YIGW+LES P I++ HEL ++TLDYR+EC D ++ SLT + GE N
Sbjct: 178 NQHVNNVTYIGWVLESIPQDIIDTHELQTITLDYRRECQHDDIVDSLTYIEEGEEKSSNG 237
Query: 383 -------TESSIQCDHLLQLE-SGADIVKAHTEWR 409
E Q H L+ +G +I + T WR
Sbjct: 238 SAFAAPHPEEQRQFLHCLRFAGNGNEINRGRTVWR 272
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,524,999
Number of extensions: 603296
Number of successful extensions: 1365
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1360
Number of HSP's successfully gapped: 7
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)